| Year | Publication |
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| (2016) | 'The Regulation of Secondary Metabolism in Photorhabdus' Clarke DJ; (2016) 'The Regulation of Secondary Metabolism in Photorhabdus'. Current Topics In Microbiology And Immunology, [DOI] [Details] |
| (2016) | 'Alarmone (p)ppGpp regulates the transition from pathogenicity to mutualism in Photorhabdus luminescens' Bager R;Roghanian M;Gerdes K;Clarke DJ; (2016) 'Alarmone (p)ppGpp regulates the transition from pathogenicity to mutualism in Photorhabdus luminescens'. Molecular Microbiology, 100 (4) [DOI] [Details] |
| (2016) | 'Glycolysis and pyrimidine biosynthesis are required for replication of adherent-invasive Escherichia coli in macrophages' Thompson AP;O'Neill I;Smith EJ;Catchpole J;Fagan A;Burgess KE;Carmody RJ;Clarke DJ; (2016) 'Glycolysis and pyrimidine biosynthesis are required for replication of adherent-invasive Escherichia coli in macrophages'. Microbiology (Reading, England), 162 (6) [DOI] [Details] |
| (2014) | 'The Genetic Basis of the Symbiosis Between Photorhabdus and Its Invertebrate Hosts' Clarke, DJ (2014) 'The Genetic Basis of the Symbiosis Between Photorhabdus and Its Invertebrate Hosts'. Advances In Applied Microbiology, 88 :1-29 [DOI] [Details] |
| (2011) | 'Degradation of the Extracellular Matrix Components by Bacterial-derived Metalloproteases: Implications for Inflammatory Bowel Diseases' Pruteanu, M;Hyland, NP;Clarke, DJ;Kiely, B;Shanahan, F (2011) 'Degradation of the Extracellular Matrix Components by Bacterial-derived Metalloproteases: Implications for Inflammatory Bowel Diseases'. Inflammatory Bowel Diseases, 17 :1189-1200 [DOI] [Details] |
| (2009) | 'Elevated levels of sigma(s) inhibit biofilm formation in Escherichia coli: a role for the Rcs phosphorelay' Ferrieres, L;Thompson, A;Clarke, DJ (2009) 'Elevated levels of sigma(s) inhibit biofilm formation in Escherichia coli: a role for the Rcs phosphorelay'. Microbiology-SGM, 155 :3544-3553 [DOI] [Details] |
| (2013) | 'The expression of stlA in Photorhabdus luminescens is controlled by nutrient limitation' Lango-Scholey, L, Brachmann, AO, Bode, HB, and Clarke, DJ (2013) 'The expression of stlA in Photorhabdus luminescens is controlled by nutrient limitation'. Plos One, 8 (11) [Details] |
| (2011) | 'The Regulation of Secondary Metabolism and Mutualism in the Insect Pathogenic Bacterium Photorhabdus luminescens' Joyce SA, Lango L, Clarke DJ (2011) 'The Regulation of Secondary Metabolism and Mutualism in the Insect Pathogenic Bacterium Photorhabdus luminescens'. Advances In Applied Microbiology, 76 :1-25 [DOI] [Details] |
| (2011) | 'Complete genome sequence of the Crohn's disease-associated adherent-invasive Escherichia coli strain HM605' Clarke DJ, Chaudhuri RR, Martin HM, Campbell BJ, Rhodes JM, Constantinidou C, Pallen MJ, Loman NJ, Cunningham AF, Browning DF, Henderson IR (2011) 'Complete genome sequence of the Crohn's disease-associated adherent-invasive Escherichia coli strain HM605'. Journal of Bacteriology, 193 (17) [DOI] [Details] |
| (2010) | 'Identification of genes involved in the mutualistic colonization of the nematode Heterorhabditis bacteriophora by the bacterium Photorhabdus luminescens' Easom, CA; Joyce, SA; Clarke, DJ; (2010) 'Identification of genes involved in the mutualistic colonization of the nematode Heterorhabditis bacteriophora by the bacterium Photorhabdus luminescens'. BMC Microbiology, 10 [DOI] [Details] |
| (2010) | 'A metabolic switch is involved in lifestyle decisions in Photorhabdus luminescens' Lango, L; Clarke, DJ; (2010) 'A metabolic switch is involved in lifestyle decisions in Photorhabdus luminescens'. Molecular Microbiology, 77 :1394-1405 [Details] |
| (2010) | 'The role of iron uptake in pathogenicity and symbiosis in Photorhabdus luminescens TT01' Watson, RJ; Millichap, P; Joyce, SA; Reynolds, SE; Clarke, DJ; (2010) 'The role of iron uptake in pathogenicity and symbiosis in Photorhabdus luminescens TT01'. BMC Microbiology, 10 [DOI] [Full Text] [Details] |
| (2010) | 'The Rcs phosphorelay: more than just a two-compoent pathway' Clarke, DJ; (2010) 'The Rcs phosphorelay: more than just a two-compoent pathway'. Future Microbiology, 5 :1173-1184 [Details] |
| (2010) | 'Dissecting the immune response to the entomopathogen Photorhabdus' Eleftherianos I, ffrench-Constant RH, Clarke DJ, Dowling AJ, Reynolds SE (2010) 'Dissecting the immune response to the entomopathogen Photorhabdus'. Trends In Microbiology, 18 (12):552-560 [DOI] [Details] |
| (2009) | 'Photorhabdus and a host of hosts' Waterfield, N. R.,Ciche, T.,Clarke, D.; (2009) 'Photorhabdus and a host of hosts'. Annu Rev Microbiol, 63 :557-74 [Details] |
| (2009) | 'Comparative functional analysis of the RcsC sensor kinase from different Enterobacteriaceae' Huang, YH,Ferrieres, L,Clarke, DJ; (2009) 'Comparative functional analysis of the RcsC sensor kinase from different Enterobacteriaceae'. Fems Microbiology Letters, 293 :248-254 [DOI] [Details] |
| (2009) | 'Heterorhabditis gerrardi n. sp. (Nematoda: Heterorhabditidae): the hidden host of Photorhabdus asymbiotica (Enterobacteriaceae: gamma-Proteobacteria)' Plichta, K. L., Joyce, S. A., Clarke, D. J., Waterfield, N. and Stock, S. P. ; (2009) 'Heterorhabditis gerrardi n. sp. (Nematoda: Heterorhabditidae): the hidden host of Photorhabdus asymbiotica (Enterobacteriaceae: gamma-Proteobacteria)'. Journal of Helminthology, 16 :1-12 [Details] |
| (2008) | 'Photorhabdus: a model for the analysis of pathogenicity and mutualism' Clarke, D. J.; (2008) 'Photorhabdus: a model for the analysis of pathogenicity and mutualism'. Cell Microbiol, 10 (11):2159-67 [Details] |
| (2008) | 'The importance of the Rcs phosphorelay in the survival and pathogenesis of the enteropathogenic yersiniae. Microbiology' Hinchliffe, S. J.,Howard, S. L.,Huang, Y. H.,Clarke, D. J.,Wren, B. W.; (2008) 'The importance of the Rcs phosphorelay in the survival and pathogenesis of the enteropathogenic yersiniae. Microbiology'. Microbiology, 154 (Pt 4):1117-31 [Details] |
| (2008) | 'Bacterial biosynthesis of a multipotent stilbene' Joyce, S. A.,Brachmann, A. O.,Glazer, I.,Lango, L.,Schwar, G.,Clarke, D. J.,Bode, H. B.; (2008) 'Bacterial biosynthesis of a multipotent stilbene'. Angew Chem Int Ed Engl, 47 (10):1942-5 [Details] |
| (2008) | 'Motility is required for the competitive fitness of entomopathogenic Photorhabdus luminescens during insect infection. BMC Microbiol' Easom, C. A.,Clarke, D. J.; (2008) 'Motility is required for the competitive fitness of entomopathogenic Photorhabdus luminescens during insect infection. BMC Microbiol'. BMC Microbiol, 8 [DOI] [Details] |
| (2007) | 'A type II polyketide synthase is responsible for anthraquinone biosynthesis in Photorhabdus luminescens' Brachmann, A. O.,Joyce, S. A.,Jenke-Kodama, H.,Schwar, G.,Clarke, D. J.,Bode, H. B.; (2007) 'A type II polyketide synthase is responsible for anthraquinone biosynthesis in Photorhabdus luminescens'. Chembiochem, 8 (14):1721-8 [Details] |
| (2007) | 'The yjbEFGH locus in Escherichia coli K-12 is an operon encoding proteins involved in exopolysaccharide production' Ferrieres, L.,Aslam, S. N.,Cooper, R. M.,Clarke, D. J.; (2007) 'The yjbEFGH locus in Escherichia coli K-12 is an operon encoding proteins involved in exopolysaccharide production'. Microbiology, 153 (Pt 4):1070-80 [Details] |
| (2007) | 'Mutualism and pathogenesis in Xenorhabdus and Photorhabdus: two roads to the same destination' Goodrich-Blair, H.,Clarke, D. J.; (2007) 'Mutualism and pathogenesis in Xenorhabdus and Photorhabdus: two roads to the same destination'. Mol Microbiol, 64 (2):260-8 [Details] |
| (2007) | 'An antibiotic produced by an insect-pathogenic bacterium suppresses host defenses through phenoloxidase inhibition' Eleftherianos, Ioannis; Boundy, Sam; Joyce, Susan A.; Aslam, Shazia; Marshall, James W.; Cox, Russell J.; Simpson, Thomas J.; Clarke, David J.; ffrench-Constant, Richard H.; Reynolds, Stuart E. (2007) 'An antibiotic produced by an insect-pathogenic bacterium suppresses host defenses through phenoloxidase inhibition'. Proceedings of The National Acadamy of Sciences, 104 (7):2419-24 [DOI] [Details] |
| (2006) | 'The role of the Rcs phosphorelay in Enterobacteriaceae' Huang, Y. H.,Ferrieres, L.,Clarke, D. J.; (2006) 'The role of the Rcs phosphorelay in Enterobacteriaceae'. Res Microbiol, 157 (3):206-12 [Details] |
| (2006) | 'The regulation of pathogenicity and mutualism in Photorhabdus' Joyce, S. A.,Watson, R. J.,Clarke, D. J.; (2006) 'The regulation of pathogenicity and mutualism in Photorhabdus'. Curr Opin Microbiol, 9 (2):127-32 [Details] |
| (2005) | 'The pbgPE operon in Photorhabdus luminescens is required for pathogenicity and symbiosis' Bennett, H. P.,Clarke, D. J.; (2005) 'The pbgPE operon in Photorhabdus luminescens is required for pathogenicity and symbiosis'. J Bacteriol, 187 (1):77-84 [Details] |
| (2005) | 'The exbD gene of Photorhabdus temperata is required for full virulence in insects and symbiosis with the nematode Heterorhabditis' Watson, R. J.,Joyce, S. A.,Spencer, G. V.,Clarke, D. J.; (2005) 'The exbD gene of Photorhabdus temperata is required for full virulence in insects and symbiosis with the nematode Heterorhabditis'. Mol Microbiol, 56 (3):763-73 [Details] |
| (2005) | 'The gene stlA encodes a phenylalanine ammonia-lyase that is involved in the production of a stilbene antibiotic in Photorhabdus luminescens TT01' Williams, J. S.,Thomas, M.,Clarke, D. J.; (2005) 'The gene stlA encodes a phenylalanine ammonia-lyase that is involved in the production of a stilbene antibiotic in Photorhabdus luminescens TT01'. Microbiology, 151 (Pt 8):2543-50 [Details] |
| (2004) | 'Study of the attachment of Pseudomonas aeruginosa on gold and modified gold surfaces using surface plasmon resonance' Jenkins, A. T.,ffrench-constant, R.,Buckling, A.,Clarke, D. J.,Jarvis, K.; (2004) 'Study of the attachment of Pseudomonas aeruginosa on gold and modified gold surfaces using surface plasmon resonance'. Biotechnol Prog, 20 (4):1233-6 [Details] |
| (2003) | 'Photorhabdus: towards a functional genomic analysis of a symbiont and pathogen' ffrench-Constant, R.,Waterfield, N.,Daborn, P.,Joyce, S.,Bennett, H.,Au, C.,Dowling, A.,Boundy, S.,Reynolds, S.,Clarke, D.; (2003) 'Photorhabdus: towards a functional genomic analysis of a symbiont and pathogen'. FEMS Microbiol Rev, 26 (5):433-56 [Details] |
| (2003) | 'The RcsC sensor kinase is required for normal biofilm formation in Escherichia coli K-12 and controls the expression of a regulon in response to growth on a solid surface' Ferrieres, L.,Clarke, D. J.; (2003) 'The RcsC sensor kinase is required for normal biofilm formation in Escherichia coli K-12 and controls the expression of a regulon in response to growth on a solid surface'. Mol Microbiol, 50 (5):1665-82 [Details] |
| (2003) | 'A hexA homologue from Photorhabdus regulates pathogenicity, symbiosis and phenotypic variation' Joyce, S. A.,Clarke, D. J.; (2003) 'A hexA homologue from Photorhabdus regulates pathogenicity, symbiosis and phenotypic variation'. Mol Microbiol, 47 (5):1445-57 [Details] |
| (2003) | 'The transmembrane domain of the DnaJ-like protein DjlA is a dimerisation domain' Toutain, C. M.,Clarke, D. J.,Leeds, J. A.,Kuhn, J.,Beckwith, J.,Holland, I. B.,Jacq, A.; (2003) 'The transmembrane domain of the DnaJ-like protein DjlA is a dimerisation domain'. Mol Genet Genomics, 268 (6):761-70 [Details] |
| (2002) | 'Genetic analysis of the RcsC sensor kinase from Escherichia coli K-12' Clarke, D. J.,Joyce, S. A.,Toutain, C. M.,Jacq, A.,Holland, I. B.; (2002) 'Genetic analysis of the RcsC sensor kinase from Escherichia coli K-12'. J Bacteriol, 184 (4):1204-8 [Details] |
| (2002) | 'The ner gene of Photorhabdus: effects on primary-form-specific phenotypes and outer membrane protein composition' O'Neill, K. H.,Roche, D. M.,Clarke, D. J.,Dowds, B. C.; (2002) 'The ner gene of Photorhabdus: effects on primary-form-specific phenotypes and outer membrane protein composition'. J Bacteriol, 184 (11):3096-105 [Details] |
| (1998) | 'Increased sensitivity of E. coli to novobiocin, EDTA and the anticalmodulin drug W7 following overproduction of DjlA requires a functional transmembrane domain' Bernard, S.,Clarke, D. J.,Chen, M. X.,Holland, I. B.,Jacq, A.; (1998) 'Increased sensitivity of E. coli to novobiocin, EDTA and the anticalmodulin drug W7 following overproduction of DjlA requires a functional transmembrane domain'. Mol Gen Genet, 259 (6):645-55 [Details] |
| (1997) | 'Point mutations in the transmembrane domain of DjlA, a membrane-linked DnaJ-like protein, abolish its function in promoting colanic acid production via the Rcs signal transduction pathway' Clarke, D. J.,Holland, I. B.,Jacq, A.; (1997) 'Point mutations in the transmembrane domain of DjlA, a membrane-linked DnaJ-like protein, abolish its function in promoting colanic acid production via the Rcs signal transduction pathway'. Mol Microbiol, 25 (5):933-44 [Details] |
| (1996) | 'The gram-negative cell envelope 'springs' to life: coiled-coil trans-envelope proteins' Pimenta, A.,Blight, M.,Clarke, D.,Holland, I. B.; (1996) 'The gram-negative cell envelope 'springs' to life: coiled-coil trans-envelope proteins'. Mol Microbiol, 19 (3):643-5 [Details] |
| (1996) | 'A novel DnaJ-like protein in Escherichia coli inserts into the cytoplasmic membrane with a type III topology' Clarke, D. J.,Jacq, A.,Holland, I. B.; (1996) 'A novel DnaJ-like protein in Escherichia coli inserts into the cytoplasmic membrane with a type III topology'. Mol Microbiol, 20 (6):1273-86 [Details] |
| (1995) | 'The relationship between growth rate of Photorhabdus sp. strain K122 and pathogenicity to Galleria mellonella (Waxmoth) larvae: the possible role of extracellular enzymes in pathogenicity' Clarke, D. J., and B. C. A. Dowds ; (1995) 'The relationship between growth rate of Photorhabdus sp. strain K122 and pathogenicity to Galleria mellonella (Waxmoth) larvae: the possible role of extracellular enzymes in pathogenicity'. J Inver Pathol, 66 :149-155 [Details] |
| (1994) | 'The gene coding for polynucleotide phosphorylase in Photorhabdus sp. strain K122 is induced at low temperatures' Clarke, D. J.,Dowds, B. C.; (1994) 'The gene coding for polynucleotide phosphorylase in Photorhabdus sp. strain K122 is induced at low temperatures'. J Bacteriol, 176 (12):3775-84 [Details] |
| (1992) | 'Isolation/generation of cold active strains of Xenorhabdus luminescens, the symbiont of entomopathogenic nematodes of the genus Heterorhabditis' Clarke, D. J., H. Wang, and B. C. A. Dowds. ; (1992) 'Isolation/generation of cold active strains of Xenorhabdus luminescens, the symbiont of entomopathogenic nematodes of the genus Heterorhabditis'. Nematologica, 32 (404) [Details] |
| (1992) | 'Pathogenicity of Xenorhabdus luminescens' Clarke, D. J.,Dowds, B. C.; (1992) 'Pathogenicity of Xenorhabdus luminescens'. Biochem Soc Trans, 20 (1) [Details] |