Biography
Professor Douwe van Sinderen holds an MSc degree in Biochemistry and a PhD degree (1994) in Molecular Genetics (University of Groningen, The Netherlands). In 1996 was appointed as academic staff member of the School of Microbiology, University College Cork, Ireland. He holds an SFI Investigator award since 2003 (renewed in 2008 and 2014), while he is also a Principal Investigator of the Alimentary Pharmabiotic Centre (APC), which is a multi-institutional and cross-disciplinary research centre related to gut health and nutrition, funded by Science Foundation Ireland. Research interests include the comparative genomics and molecular biology of bacteriophages infecting lactic acid bacteria, in particular Lactococcus lactis, Streptococcus thermophilus and certain Lactobacillus species. Furthermore, a significant part of his research activities is dedicated to comparative and functional genomics of bifidobacteria, which represent common gut commensals of mammals, including humans, with many reported health benefits. He has been principal investigator and/or co-ordinator of various EU funded projects, as well as projects funded through various national and international funding agencies and industries, and has served on various national advisory boards. He is a co-author of over 250 peer-reviewed papers, over 15 book chapters, editor of 2 books, and listed as an (co-)inventor of 6 patents (see below for further details). His current Web of Science-measured h-index is 49 (measured by Google Scholar: h-index 53).
Research Interests
Research interests and expertise. Genetics and genomics of lactic acid bacteria and their infecting bacteriophages; comparative and functional genomics of bifidobacteria; antimicrobial activities produced by lactic acid bacteria (including anti-fungal compounds and bacteriophage-derived enzymes). Bioinformatics, gene regulation in Gram positive bacteria, bacteriophage resistance.
Research activities. Current research activities include the molecular biology and comparative genomics of bacteriophages infecting lactic acid bacteria that are used for the production of fermented foods (e.g. cheese, yoghurt). In particular the research is aimed at understanding phage-host interactions and the development of novel anti-phage strategies. In addition, research is ongoing to study anti-fungal activities produced by lactic acid bacteria.
Furthermore, within the Alimentary Pharmabiotic Centre, research is focused on comparative and functional genomics of bifidobacteria in order to understand how these microbes, which represent the dominant bacteria in breast-fed infants, can colonize and interact with their (human) host to elicit beneficial activities. In particular, we study bifidobacterial carbohydrate mechanism in order to understand how diet may influence the presence and activity of bifidobacteria. We are also investigating how specific bifidobacterial macromolecules, such as pili and EPS, facilitate gut colonisation, pathogen exclusion and immune-modulation.
Publications. For a complete list of publications, including citation and h-index metrics, see:
http://scholar.google.com/citations?user=s4-6_RQAAAAJ&hl=en or
http://www.researcherid.com/rid/A-6778-2015
For Web of Science subscribers: my most accurate and up-to-date publication data can be retrieved by a basic search using 'van sinderen d or vansinderen d' as an author search term.
Research funding. More than €11M of research funding was secured since 2005; obtained from national (Science Foundation Ireland, Department of Agriculture, Food & Fisheries, Irish Research Council) and European grant agencies (FP7 and predecessors), as well as Trusts and Foundations and a wide range of industrial sources. Selected examples of secured (competitive) funding are indicated below (NB no industry funding is indicated due to commercial sensitivities).
Research Grants
| Project | Funding Body | Start Date | End Date | Award | |
|---|---|---|---|---|---|
| National Cheese Research Programme 2015. | Department of Agriculture Fisheries & Forestry (DAFF) | 01-NOV-11 | 30-NOV-15 | €170,300.00 | |
| [EU HPMD-CT-2000-00027]{van Sinderen D}N | European Union | 09-AUG-00 | 08-NOV-05 | €339,264.00 | |
| Training Network for the Development of Bacterial ExoPolysaccharides for the treatment of Inflammatory conditions. | European Union | 01-DEC-11 | 30-NOV-15 | €121,059.00 | |
| "Food Preservation using Lactic Acid Bacteria " Lauritzson | Foundation Funded Research | 01-JUL-08 | 31-MAY-17 | €160,000.00 | |
| IRCSET Postdoc "Identification & characterization of genes of Bifidobacterium breve that are essenti | Irish Research Council for Science, Engineering & Technology (IRCSET) | 01-AUG-07 | 30-NOV-09 | €112,350.00 | |
| Alimentry Glycosciences Research Cluster Strategic Research Cluster | Science Foundation of Ireland | 01-JAN-09 | 31-DEC-14 | €172,882.00 | |
| IRCSET PG "Characterisation of exopolysaccharide probiotic" | Irish Research Council for Science, Engineering & Technology (IRCSET) | 01-OCT-06 | 30-SEP-09 | €72,009.00 | |
| a Structure-function analysis | Science Foundation of Ireland | 01-JAN-09 | 30-JUN-14 | €1,273,681.00 | |
| Genome-Scale analysis of human gut commensal bacteria | Irish Research Council for Science, Engineering & Technology (IRCSET) | 15-DEC-09 | 14-DEC-13 | €72,009.00 | |
| Novel prebiotics from plant-derived sugars using bifidobacterial enzymes. | Department of Agriculture Fisheries & Forestry (DAFF) | 01-NOV-12 | 30-OCT-16 | €170,500.00 | |
| IRCSET "Lactic Acid Bacteria Systems Biology" | Irish Research Council for Science, Engineering & Technology (IRCSET) | 01-SEP-05 | 31-AUG-07 | €96,300.00 | |
| Genertics of conjugated linoleic acid production in bifidobacteria. | Foundation Funded Research | 01-OCT-09 | 30-SEP-13 | €160,000.00 | |
| Functional Analysis of the host absortion and DNA injection processes of a lactococcal bacteriophage. | Science Foundation of Ireland | 01-JUL-14 | 30-JUN-19 | €1,370,281.00 | |
| IRC GOIPG/2013/651 PG Kieran James S: Development of the infant gut microbiota - the role of human milk oligosaccharides in bifidobacterial metabolism. | Irish Research Council | 01-OCT-13 | 30-SEP-17 | €96,000.00 |
Publications
Peer Reviewed Journals
| Year | Publication | |
|---|---|---|
| (2014) | 'Differences in Lactococcal Cell Wall Polysaccharide Structure Are Major Determining Factors in Bacteriophage Sensitivity' Ainsworth, S,Sadovskaya, I,Vinogradov, E,Courtin, P,Guerardel, Y,Mahony, J,Grard, T,Cambillau, C,Chapot-Chartier, MP,van Sinderen, D (2014) 'Differences in Lactococcal Cell Wall Polysaccharide Structure Are Major Determining Factors in Bacteriophage Sensitivity'. Mbio, 5 [DOI] [Details] | |
| (2014) | 'Identification of Restriction-Modification Systems of Bifidobacterium animalis subsp lactis CNCM I-2494 by SMRT Sequencing and Associated Methylome Analysis' Motherway, MO,Watson, D,Bottacini, F,Clark, TA,Roberts, RJ,Korlach, J,Garault, P,Chervaux, C,Vlieg, JETV,Smokvina, T,van Sinderen, D (2014) 'Identification of Restriction-Modification Systems of Bifidobacterium animalis subsp lactis CNCM I-2494 by SMRT Sequencing and Associated Methylome Analysis'. Plos One, 9 [DOI] [Details] | |
| (2014) | 'Autoinducer-2 Plays a Crucial Role in Gut Colonization and Probiotic Functionality of Bifidobacterium breve UCC2003' Christiaen SE, O'Connell Motherway M, Bottacini F, Lanigan N, Casey PG, Huys G, Nelis HJ, van Sinderen D, Coenye T (2014) 'Autoinducer-2 Plays a Crucial Role in Gut Colonization and Probiotic Functionality of Bifidobacterium breve UCC2003'. Plos One, 9 (5) [DOI] [Details] | |
| (2014) | 'Transcription of Two Adjacent Carbohydrate Utilization Gene Clusters in Bifidobacterium breve UCC2003 Is Controlled by LacI-and Repressor Open Reading Frame Kinase (ROK)-Type Regulators' O'Connell, Kerry Joan and Motherway, Mary O'Connell and Liedtke, Andrea and Fitzgerald, Gerald F and Ross, R Paul and Stanton, Catherine and Zomer, Aldert and van Sinderen, Douwe (2014) 'Transcription of Two Adjacent Carbohydrate Utilization Gene Clusters in Bifidobacterium breve UCC2003 Is Controlled by LacI-and Repressor Open Reading Frame Kinase (ROK)-Type Regulators'. Applied and environmental microbiology, 80 (12):3604-3614 [Details] | |
| (2014) | 'Novel strategies to prevent or exploit phages in fermentations, insights from phage–host interaction' Jennifer Mahony1, Douwe van Sinderen1 (2014) 'Novel strategies to prevent or exploit phages in fermentations, insights from phage–host interaction'. Current Opinion In Biotechnology, 32 :8-13 [Details] | |
| (2014) | 'Discovery of a conjugative megaplasmid in Bifidobacterium breve' Francesca Bottacini1, Mary O'Connell Motherway1, Eoghan Casey2, Brian McDonnell2, Jennifer Mahony2, Marco Ventura3 and Douwe van Sinderen1,2* (2014) 'Discovery of a conjugative megaplasmid in Bifidobacterium breve'. Applied and Environmental Microbiology, 80 (24) [Details] | |
| (2014) | 'Lactobacillus rossiae, a Vitamin B12 Producer, Represents a Metabolically Versatile Species within the Genus Lactobacillus' Maria De Angelis ¶, Francesca Bottacini ¶, Bruno Fosso, Philip Kelleher, Maria Calasso, Raffaella Di Cagno, Marco Ventura, Ernesto Picardi, Douwe van Sinderen ¶ mail, Marco Gobbetti ¶ mail (2014) 'Lactobacillus rossiae, a Vitamin B12 Producer, Represents a Metabolically Versatile Species within the Genus Lactobacillus'. Plos One, [Details] | |
| (2014) | 'Metabolism of Sialic Acid by Bifidobacterium breve UCC2003' Egan, M,Motherway, MO,Ventura, M,van Sinderen, D (2014) 'Metabolism of Sialic Acid by Bifidobacterium breve UCC2003'. Applied and Environmental Microbiology, 80 :4414-4426 [DOI] [Details] | |
| (2014) | 'Molecular dialogue between the human gut microbiota and the host: a Lactobacillus and Bifidobacterium perspective' Turroni, F,Ventura, M,Butto, LF,Duranti, S,O'Toole, PW,Motherway, MO,van Sinderen, D (2014) 'Molecular dialogue between the human gut microbiota and the host: a Lactobacillus and Bifidobacterium perspective'. Cellular and Molecular Life Sciences, 71 :183-203 [DOI] [Details] | |
| (2014) | 'Impact of thermal and biocidal treatments on lactococcal 936-type phages (vol 34, pg 56, 2014)' Murphy, J,Mahony, J,Bonestroo, M,Nauta, A,van Sinderen, D (2014) 'Impact of thermal and biocidal treatments on lactococcal 936-type phages (vol 34, pg 56, 2014)'. International Dairy Journal, 37 :55-55 [DOI] [Details] | |
| (2014) | 'Bifidobacteria and humans: our special friends, from ecological to genomics perspectives' Ventura, M,Turroni, F,Lugli, GA,van Sinderen, D (2014) 'Bifidobacteria and humans: our special friends, from ecological to genomics perspectives'. Journal of The Science of Food and Agriculture, 94 :163-168 [DOI] [Details] | |
| (2014) | 'Progress in lactic acid bacterial phage research' Mahony, Jennifer and Bottacini, Francesca and van Sinderen, Douwe and Fitzgerald, Gerald F (2014) 'Progress in lactic acid bacterial phage research'. Microbial Cell Factories, 13 (Suppl 1) [Details] | |
| (2014) | 'Bifidobacterium bifidum PRL2010 Modulates the Host Innate Immune Response' Turroni, F,Taverniti, V,Ruas-Madiedo, P,Duranti, S,Guglielmetti, S,Lugli, GA,Gioiosa, L,Palanza, P,Margolles, A,van Sinderen, D,Ventura, M (2014) 'Bifidobacterium bifidum PRL2010 Modulates the Host Innate Immune Response'. Applied and Environmental Microbiology, 80 :730-740 [DOI] [Details] | |
| (2014) | 'Kefir fermented milk and kefiran promote growth of Bifidobacterium bifidum PRL2010 and modulate its gene expression' Serafini, F,Turroni, F,Ruas-Madiedo, P,Lugli, GA,Milani, C,Duranti, S,Zamboni, N,Bottacini, F,van Sinderen, D,Margolles, A,Ventura, M (2014) 'Kefir fermented milk and kefiran promote growth of Bifidobacterium bifidum PRL2010 and modulate its gene expression'. International Journal of Food Microbiology, 178 :50-59 [DOI] [Details] | |
| (2014) | 'Impact of thermal and biocidal treatments on lactococcal 936-type phages' Murphy, J,Mahony, J,Bonestroo, M,Nauta, A,van Sinderen, D (2014) 'Impact of thermal and biocidal treatments on lactococcal 936-type phages'. International Dairy Journal, 34 :56-61 [DOI] [Details] | |
| (2014) | 'The Plasmid Complement of Lactococcus lactis UC509.9 Encodes Multiple Bacteriophage Resistance Systems' Ainsworth, S,Mahony, J,van Sinderen, D (2014) 'The Plasmid Complement of Lactococcus lactis UC509.9 Encodes Multiple Bacteriophage Resistance Systems'. Applied and Environmental Microbiology, 80 :4341-4349 [DOI] [Details] | |
| (2014) | 'Transcription of Two Adjacent Carbohydrate Utilization Gene Clusters in Bifidobacterium breve UCC2003 Is Controlled by LacI- and Repressor Open Reading Frame Kinase (ROK)-Type Regulators' O'Connell, KJ,Motherway, MO,Liedtke, A,Fitzgerald, GF,Ross, RP,Stanton, C,Zomer, A,van Sinderen, D (2014) 'Transcription of Two Adjacent Carbohydrate Utilization Gene Clusters in Bifidobacterium breve UCC2003 Is Controlled by LacI- and Repressor Open Reading Frame Kinase (ROK)-Type Regulators'. Applied and Environmental Microbiology, 80 :3604-3614 [DOI] [Details] | |
| (2014) | 'Characterization of virus-like particles associated with the human faecal and caecal microbiota' Lesley Hoylesa, , Anne L. McCartneyb, , Horst Nevec, , Glenn R. Gibsonb, , Jeremy D. Sandersond, , Knut J. Hellerc, , Douwe van Sinderena, e, , (2014) 'Characterization of virus-like particles associated with the human faecal and caecal microbiota'. Research In Microbiology, [Details] | |
| (2014) | 'Diversity, ecology and intestinal function of bifidobacteria' Francesca Bottacini1,2, Marco Ventura2 , Douwe van Sinderen1 , Mary O’Connell Motherway1* (2014) 'Diversity, ecology and intestinal function of bifidobacteria'. Microbial Cell Factories, 13 [Details] | |
| (2014) | 'Current taxonomy of phages infecting lactic acid bacteria' Mahony, J,van Sinderen, D (2014) 'Current taxonomy of phages infecting lactic acid bacteria'. Frontiers In Microbiology, 5 [DOI] [Details] | |
| (2014) | 'Comparative genomics of the Bifidobacterium breve taxon' Bottacini, F,Motherway, MO,Kuczynski, J,O'Connell, KJ,Serafini, F,Duranti, S,Milani, C,Turroni, F,Lugli, GA,Zomer, A,Zhurina, D,Riedel, C,Ventura, M,van Sinderen, D (2014) 'Comparative genomics of the Bifidobacterium breve taxon'. BMC Genomics, 15 [DOI] [Details] | |
| (2014) | 'T-cell activation by transitory neo-antigens derived from distinct microbial pathways' Corbett, AJ,Eckle, SBG,Birkinshaw, RW,Liu, LG,Patel, O,Mahony, J,Chen, ZJ,Reantragoon, R,Meehan, B,Cao, HW,Williamson, NA,Strugnell, RA,Van Sinderen, D,Mak, JYW,Fairlie, DP,Kjer-Nielsen, L,Rossjohn, J,McCluskey, J (2014) 'T-cell activation by transitory neo-antigens derived from distinct microbial pathways'. Nature, 509 [DOI] [Details] | |
| (2013) | 'GENETIC ALGORITHIMS' Timmy Manning, Roy D Sleator, Paul Walsh, Lakshmi S Vijayachandran, Deepak B Thimiri Govinda Raj, Evelina Edelweiss, Kapil Gupta, Josef Maier, Valentin Gordeliy, Daniel J Fitzgerald, Imre Berger, Catherine EM Hogwood, Daniel G Bracewell, C Mark Smales, Hui Lin, Qun Wang, Qi Shen, Jumei Zhan, Yuhua Zhao, Maria-Cristina S Pranchevicius, Thiessa R Vieira, Kerry Joan O’Connell, Mary O’Connell Motherway, Alan A Hennessey, Florian Brodhun, R Paul Ross, Ivo Feussner, Catherine Stanton, Gerald F Fitzgerald, Douwe van Sinderen, Orquídea Ribeiro, Frederico Magalhães, Tatiana Q Aguiar, Marilyn G Wiebe, Merja Penttilä, Lucília Domingues, Claudio Nicolini, Manju Singh, Rosanna Spera, Lamberto Felli, Tarlan Mamedov, Vidadi Yusibov (2013) 'GENETIC ALGORITHIMS'. Bioengineered, 4 (5) [Details] | |
| (2013) | 'Assessing the Fecal Microbiota: An Optimized Ion Torrent 16S rRNA Gene-Based Analysis Protocol' Milani, C,Hevia, A,Foroni, E,Duranti, S,Turroni, F,Lugli, GA,Sanchez, B,Martin, R,Gueimonde, M,van Sinderen, D,Margolles, A,Ventura, M (2013) 'Assessing the Fecal Microbiota: An Optimized Ion Torrent 16S rRNA Gene-Based Analysis Protocol'. Plos One, 8 [DOI] [Details] | |
| (2013) | 'Biodiversity of lactococcal bacteriophages isolated from 3 Gouda-type cheese-producing plants' Murphy, J,Royer, B,Mahony, J,Hoyles, L,Heller, K,Neve, H,Bonestroo, M,Nauta, A,van Sinderen, D (2013) 'Biodiversity of lactococcal bacteriophages isolated from 3 Gouda-type cheese-producing plants'. Journal of Dairy Science, 96 :4945-4957 [DOI] [Details] | |
| (2013) | 'Viral infection modulation and neutralization by camelid nanobodies' Desmyter, A,Farenc, C,Mahony, J,Spinelli, S,Bebeacua, C,Blangy, S,Veesler, D,van Sinderen, D,Cambillau, C (2013) 'Viral infection modulation and neutralization by camelid nanobodies'. Proceedings of The National Academy of Sciences of The United States of America, 110 :1371-1379 [DOI] [Details] | |
| (2013) | 'Comparative Genomics of Bifidobacterium animalis subsp lactis Reveals a Strict Monophyletic Bifidobacterial Taxon' Milani, C,Duranti, S,Lugli, GA,Bottacini, F,Strati, F,Arioli, S,Foroni, E,Turroni, F,van Sinderen, D,Ventura, M (2013) 'Comparative Genomics of Bifidobacterium animalis subsp lactis Reveals a Strict Monophyletic Bifidobacterial Taxon'. Applied and Environmental Microbiology, 79 :4304-4315 [DOI] [Details] | |
| (2013) | 'Identification of a New P335 Subgroup through Molecular Analysis of Lactococcal Phages Q33 and BM13' Mahony, J,Martel, B,Tremblay, DM,Neve, H,Heller, KJ,Moineau, S,van Sinderen, D (2013) 'Identification of a New P335 Subgroup through Molecular Analysis of Lactococcal Phages Q33 and BM13'. Applied and Environmental Microbiology, 79 :4401-4409 [DOI] [Details] | |
| (2013) | 'Role of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in modulating bacterium-host interactions' Turroni, F,Serafini, F,Foroni, E,Duranti, S,Motherway, MO,Taverniti, V,Mangifesta, M,Milani, C,Viappiani, A,Roversi, T,Sanchez, B,Santoni, A,Gioiosa, L,Ferrarini, A,Delledonne, M,Margolles, A,Piazza, L,Palanza, P,Bolchi, A,Guglielmetti, S,van Sinderen, D,Ventura, M (2013) 'Role of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in modulating bacterium-host interactions'. Proceedings of The National Academy of Sciences of The United States of America, 110 :11151-11156 [DOI] [Details] | |
| (2013) | 'Exploration of the Genomic Diversity and Core Genome of the Bifidobacterium adolescentis Phylogenetic Group by Means of a Polyphasic Approach' Duranti, S,Turroni, F,Milani, C,Foroni, E,Bottacini, F,Dal Bello, F,Ferrarini, A,Delledonne, M,van Sinderen, D,Ventura, M (2013) 'Exploration of the Genomic Diversity and Core Genome of the Bifidobacterium adolescentis Phylogenetic Group by Means of a Polyphasic Approach'. Applied and Environmental Microbiology, 79 :336-346 [DOI] [Details] | |
| (2013) | 'Identification and characterization of an oleate hydratase-encoding gene from Bifidobacterium breve' O'Connell, Kerry Joan and Motherway, Mary O'Connell and Hennessey, Alan A and Brodhun, Florian and Ross, R Paul and Feussner, Ivo and Stanton, Catherine and Fitzgerald, Gerald F and van Sinderen, Douwe (2013) 'Identification and characterization of an oleate hydratase-encoding gene from Bifidobacterium breve'. Bioengineered, 4 (5) [Details] | |
| (2013) | 'Broad-spectrum antifungal-producing lactic acid bacteria and their application in fruit models' Crowley, S,Mahony, J,van Sinderen, D (2013) 'Broad-spectrum antifungal-producing lactic acid bacteria and their application in fruit models'. Folia microbiologica, 58 :291-299 [DOI] [Details] | |
| (2013) | 'Selective carbohydrate utilization by lactobacilli and bifidobacteria' Watson, D,Motherway, MO,Schoterman, MHC,van Neerven, RJJ,Nauta, A,van Sinderen, D (2013) 'Selective carbohydrate utilization by lactobacilli and bifidobacteria'. Journal of Applied Microbiology, 114 :1132-1146 [DOI] [Details] | |
| (2013) | 'Evaluation of adhesion properties and antibacterial activities of the infant gut commensal Bifidobacterium bifidum PRL2010' Serafini, F,Strati, F,Ruas-Madiedo, P,Turroni, F,Foroni, E,Duranti, S,Milano, F,Perotti, A,Viappiani, A,Guglielmetti, S,Buschini, A,Margolles, A,van Sinderen, D,Ventura, M (2013) 'Evaluation of adhesion properties and antibacterial activities of the infant gut commensal Bifidobacterium bifidum PRL2010'. Anaerobe, 21 :9-17 [DOI] [Details] | |
| (2013) | 'Structure and Functional Analysis of the Host Recognition Device of Lactococcal Phage Tuc2009' Collins, B,Bebeacua, C,Mahony, J,Blangy, S,Douillard, FP,Veesler, D,Cambillau, C,van Sinderen, D (2013) 'Structure and Functional Analysis of the Host Recognition Device of Lactococcal Phage Tuc2009'. Journal of virology, 87 :8429-8440 [DOI] [Details] | |
| (2013) | 'Metabolism of Four alpha-Glycosidic Linkage-Containing Oligosaccharides by Bifidobacterium breve UCC2003' O'Connell, KJ,Motherway, MO,O'Callaghan, J,Fitzgerald, GF,Ross, RP,Ventura, M,Stanton, C,van Sinderen, D (2013) 'Metabolism of Four alpha-Glycosidic Linkage-Containing Oligosaccharides by Bifidobacterium breve UCC2003'. Applied and Environmental Microbiology, 79 :6280-6292 [DOI] [Details] | |
| (2013) | 'Transcriptional and functional characterization of genetic elements involved in galacto-oligosaccharide utilization by Bifidobacterium breve UCC2003' Motherway, MO,Kinsella, M,Fitzgerald, GF,van Sinderen, D (2013) 'Transcriptional and functional characterization of genetic elements involved in galacto-oligosaccharide utilization by Bifidobacterium breve UCC2003'. Microbial Biotechnology, 6 :67-79 [DOI] [Details] | |
| (2013) | 'Transcriptomic and morphological profiling of Aspergillus fumigatus Af293 in response to antifungal activity produced by Lactobacillus plantarum 16' Crowley, S,Mahony, J,Morrissey, JP,van Sinderen, D (2013) 'Transcriptomic and morphological profiling of Aspergillus fumigatus Af293 in response to antifungal activity produced by Lactobacillus plantarum 16'. Microbiology-SGM, 159 :2014-2024 [DOI] [Details] | |
| (2013) | 'Exploration of the Genomic Diversity and Core Genome of the Bifidobacterium adolescentis Phylogenetic Group by Means of a Polyphasic Approach' Duranti, S.,Turroni, F.,Milani, C.,Foroni, E.,Bottacini, F.,Dal Bello, F.,Ferrarini, A.,Delledonne, M.,van Sinderen, D.,Ventura, M. (2013) 'Exploration of the Genomic Diversity and Core Genome of the Bifidobacterium adolescentis Phylogenetic Group by Means of a Polyphasic Approach'. Appl Environ Microbiol, 79 (11):336-46336 [Details] | |
| (2013) | 'Transcriptional and functional characterization of genetic elements involved in galacto-oligosaccharide utilization by Bifidobacterium breve UCC2003' O'Connell Motherway, M.,Kinsella, M.,Fitzgerald, G. F.,van Sinderen, D. (2013) 'Transcriptional and functional characterization of genetic elements involved in galacto-oligosaccharide utilization by Bifidobacterium breve UCC2003'. Microb Biotechnol, 6 (11):67-7967 [Details] | |
| (2013) | 'Investigation of the Relationship between Lactococcal Host Cell Wall Polysaccharide Genotype and 936 Phage Receptor Binding Protein Phylogeny' Mahony, J,Kot, W,Murphy, J,Ainsworth, S,Neve, H,Hansen, LH,Heller, KJ,Sorensen, SJ,Hammer, K,Cambillau, C,Vogensen, FK,van Sinderen, D (2013) 'Investigation of the Relationship between Lactococcal Host Cell Wall Polysaccharide Genotype and 936 Phage Receptor Binding Protein Phylogeny'. Applied and Environmental Microbiology, 79 :4385-4392 [DOI] [Details] | |
| (2013) | 'The Lactococcal Phages Tuc2009 and TP901-1 Incorporate Two Alternate Forms of Their Tail Fiber into Their Virions for Infection Specialization' Stockdale, SR,Mahony, J,Courtin, P,Chapot-Chartier, MP,van Pijkeren, JP,Britton, RA,Neve, H,Heller, KJ,Aideh, B,Vogensen, FK,van Sinderen, D (2013) 'The Lactococcal Phages Tuc2009 and TP901-1 Incorporate Two Alternate Forms of Their Tail Fiber into Their Virions for Infection Specialization'. The Journal of Biological Chemistry, 288 :5581-5590 [DOI] [Details] | |
| (2013) | 'In silico assigned resistance genes confer bifidobacterium with partial resistance to aminoglycosides but not to $\beta$-lactams' Fouhy, Fiona and Motherway, Mary O’Connell and Fitzgerald, Gerald F and Ross, R Paul and Stanton, Catherine and van Sinderen, Douwe and Cotter, Paul D (2013) 'In silico assigned resistance genes confer bifidobacterium with partial resistance to aminoglycosides but not to $\beta$-lactams'. Plos One, 8 (12) [Details] | |
| (2013) | 'Transposon Mutagenesis in Bifidobacterium breve: Construction and Characterization of a Tn5 Transposon Mutant Library for Bifidobacterium breve UCC2003' Ruiz, L,Motherway, MO,Lanigan, N,van Sinderen, D (2013) 'Transposon Mutagenesis in Bifidobacterium breve: Construction and Characterization of a Tn5 Transposon Mutant Library for Bifidobacterium breve UCC2003'. Plos One, 8 [DOI] [Details] | |
| (2013) | 'Lytic Infection of Lactococcus lactis by Bacteriophages Tuc2009 and c2 Triggers Alternative Transcriptional Host Responses' Ainsworth, S,Zomer, A,Mahony, J,van Sinderen, D (2013) 'Lytic Infection of Lactococcus lactis by Bacteriophages Tuc2009 and c2 Triggers Alternative Transcriptional Host Responses'. Applied and Environmental Microbiology, 79 :4786-4798 [DOI] [Details] | |
| (2013) | 'Identification and characterization of an oleate hydratase-encoding gene from Bifidobacterium breve' O'Connell, KJ,Motherway, MO,Hennessey, AA,Brodhun, F,Ross, RP,Feussner, I,Stanton, C,Fitzgerald, GF,van Sinderen, D (2013) 'Identification and characterization of an oleate hydratase-encoding gene from Bifidobacterium breve'. Bioengineered, 4 :313-321 [DOI] [Details] | |
| (2012) | 'Diversity of Bifidobacteria within the Infant Gut Microbiota' Turroni, Francesca and Peano, Clelia and Pass, Daniel A. and Foroni, Elena and Severgnini, Marco and Claesson, Marcus J. and Kerr, Colm and Hourihane, Jonathan and Murray, Deirdre and Fuligni, Fabio and Gueimonde, Miguel and Margolles, Abelardo and De Bellis, Gianluca and O'Toole, Paul W. and van Sinderen, Douwe and Marchesi, Julian R. and Ventura, Marco (2012) 'Diversity of Bifidobacteria within the Infant Gut Microbiota'. Plos One, 7 (5) [DOI] [Details] | |
| (2012) | 'Bifidobacterium asteroides PRL2011 Genome Analysis Reveals Clues for Colonization of the Insect Gut' Bottacini, F,Milani, C,Turroni, F,Sanchez, B,Foroni, E,Duranti, S,Serafini, F,Viappiani, A,Strati, F,Ferrarini, A,Delledonne, M,Henrissat, B,Coutinho, P,Fitzgerald, GF,Margolles, A,van Sinderen, D,Ventura, M (2012) 'Bifidobacterium asteroides PRL2011 Genome Analysis Reveals Clues for Colonization of the Insect Gut'. Plos One, 7 [DOI] [Details] | |
| (2012) | 'Host--microbe interactions that facilitate gut colonization by commensal bifidobacteria' Ventura, Marco and Turroni, Francesca and Motherway, Mary O’Connell and MacSharry, John and van Sinderen, Douwe (2012) 'Host--microbe interactions that facilitate gut colonization by commensal bifidobacteria'. Trends In Microbiology, 20 (10):467-476 [Details] | |
| (2012) | 'Fibrinogen-binding and platelet-aggregation activities of a Lactobacillus salivarius septicaemia isolate are mediated by a novel fibrinogen-binding protein' Collins, James and van Pijkeren, Jan-Peter and Svensson, Lisbeth and Claesson, Marcus J. and Sturme, Mark and Li, Yin and Cooney, Jakki C. and van Sinderen, Douwe and Walker, Alan W. and Parkhill, Julian and Shannon, Oonagh and O'Toole, Paul W. (2012) 'Fibrinogen-binding and platelet-aggregation activities of a Lactobacillus salivarius septicaemia isolate are mediated by a novel fibrinogen-binding protein'. Molecular Microbiology, 85 (5):862-877 [DOI] [Details] | |
| (2012) | 'Sugar coating helps probiotics survive' Fanning, S,Van Sinderen, D (2012) 'Sugar coating helps probiotics survive'. Agro Food Industry Hi-Tech, 23 [Details] | |
| (2012) | 'Identification of iron-regulated genes of Bifidobacterium breve UCC2003 as a basis for controlled gene expression' Cronin, Michelle and Zomer, Aldert and Fitzgerald, Gerald and van Sinderen, Douwe (2012) 'Identification of iron-regulated genes of Bifidobacterium breve UCC2003 as a basis for controlled gene expression'. Bioengineered Bugs, 3 (3) [Details] | |
| (2012) | 'A Conserved Two-Component Signal Transduction System Controls the Response to Phosphate Starvation in Bifidobacterium breve UCC2003' Alvarez-Martin, P,Fernandez, M,O'Connell-Motherway, M,O'Connell, KJ,Sauvageot, N,Fitzgerald, GF,MacSharry, J,Zomer, A,van Sinderen, D (2012) 'A Conserved Two-Component Signal Transduction System Controls the Response to Phosphate Starvation in Bifidobacterium breve UCC2003'. Applied and Environmental Microbiology, 78 :5258-5269 [DOI] [Details] | |
| (2012) | 'Analysis of Predicted Carbohydrate Transport Systems Encoded by Bifidobacterium bifidum PRL2010' Turroni, F,Strati, F,Foroni, E,Serafini, F,Duranti, S,van Sinderen, D,Ventura, M (2012) 'Analysis of Predicted Carbohydrate Transport Systems Encoded by Bifidobacterium bifidum PRL2010'. Applied and Environmental Microbiology, 78 :5002-5012 [DOI] [Details] | |
| (2012) | 'Diet drives gut microbiota variation in the elderly which correlates with health' Claesson MJ, Jeffery IB, Conde S, Power SE, O’Connor EM, Cusack S, Harris H, Coakley M, Laks B, O’Sullivan O, Fitzgerald G, Deane J, Harnedy N, O’Connor K, O’Mahony D, van Sinderen D, Wallace M, Brennan L, Stanton C, Marchesi JR, Fitzgerald AP, Shanahan F, Hill C, R Ross P, O’Toole PW (2012) 'Diet drives gut microbiota variation in the elderly which correlates with health'. Nature, [Details] | |
| (2012) | 'A bile-inducible membrane protein mediates bifidobacterial bile resistance' Ruiz, L,O'Connell-Motherway, M,Zomer, A,de los Reyes-Gavilan, CG,Margolles, A,van Sinderen, D (2012) 'A bile-inducible membrane protein mediates bifidobacterial bile resistance'. Microbial Biotechnology, 5 :523-535 [DOI] [Details] | |
| (2012) | 'Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism' Veesler, D,Spinelli, S,Mahony, J,Lichiere, J,Blangy, S,Bricogne, G,Legrand, P,Ortiz-Lombardia, M,Campanacci, V,van Sinderen, D,Cambillau, C (2012) 'Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism'. Proceedings of The National Academy of Sciences of The United States of America, 109 :8954-8958 [DOI] [Details] | |
| (2012) | 'Discovering Novel Bile Protection Systems in Bifidobacterium breve UCC2003 through Functional Genomics' Ruiz, L,Zomer, A,O'Connell-Motherway, M,van Sinderen, D,Margolles, A (2012) 'Discovering Novel Bile Protection Systems in Bifidobacterium breve UCC2003 through Functional Genomics'. Applied and Environmental Microbiology, 78 :1123-1131 [DOI] [Details] | |
| (2012) | 'Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection' Fanning, S,Hall, LJ,Cronin, M,Zomer, A,MacSharry, J,Goulding, D,Motherway, MO,Shanahan, F,Nally, K,Dougan, G,van Sinderen, D (2012) 'Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection'. Proceedings of The National Academy of Sciences of The United States of America, 109 :2108-2113 [DOI] [Details] | |
| (2012) | 'A two-component regulatory system controls autoregulated serpin expression in Bifidobacterium breve UCC2003' Alvarez-Martin, P.,O'Connell Motherway, M.,Turroni, F.,Foroni, E.,Ventura, M.,van Sinderen, D. (2012) 'A two-component regulatory system controls autoregulated serpin expression in Bifidobacterium breve UCC2003'. Appl Environ Microbiol, 78 (1919):7032-417032 [Details] | |
| (2012) | 'Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut' Bottacini, F.,Milani, C.,Turroni, F.,Sanchez, B.,Foroni, E.,Duranti, S.,Serafini, F.,Viappiani, A.,Strati, F.,Ferrarini, A.,Delledonne, M.,Henrissat, B.,Coutinho, P.,Fitzgerald, G. F.,Margolles, A.,van Sinderen, D.,Ventura, M. (2012) 'Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut'. PLoS One, 7 (99) [Details] | |
| (2012) | 'High resolution in vivo bioluminescent imaging for the study of bacterial tumour targeting' Cronin, M.,Akin, A. R.,Collins, S. A.,Meganck, J.,Kim, J. B.,Baban, C. K.,Joyce, S. A.,van Dam, G. M.,Zhang, N.,van Sinderen, D.,O'Sullivan, G. C.,Kasahara, N.,Gahan, C. G.,Francis, K. P.,Tangney, M. (2012) 'High resolution in vivo bioluminescent imaging for the study of bacterial tumour targeting'. PLoS One, 7 (11) [Details] | |
| (2012) | 'Identification of iron-regulated genes of Bifidobacterium breve UCC2003 as a basis for controlled gene expression' Cronin, M.,Zomer, A.,Fitzgerald, G. F.,van Sinderen, D. (2012) 'Identification of iron-regulated genes of Bifidobacterium breve UCC2003 as a basis for controlled gene expression'. Bioeng Bugs, 3 (33):157-67157 [Details] | |
| (2012) | 'Broad-spectrum antifungal-producing lactic acid bacteria and their application in fruit models' Crowley, S.,Mahony, J.,van Sinderen, D. (2012) 'Broad-spectrum antifungal-producing lactic acid bacteria and their application in fruit models'. Folia Microbiol (Praha), [Details] | |
| (2012) | 'Bifidobacterium breve UCC2003 surface exopolysaccharide production is a beneficial trait mediating commensal-host interaction through immune modulation and pathogen protection' Fanning, S.,Hall, L. J.,van Sinderen, D. (2012) 'Bifidobacterium breve UCC2003 surface exopolysaccharide production is a beneficial trait mediating commensal-host interaction through immune modulation and pathogen protection'. Gut Microbes, 3 (55):420-5420 [Details] | |
| (2012) | 'Genome sequence of Parascardovia denticolens IPLA 20019, isolated from human breast milk' Gueimonde, M.,Bottacini, F.,van Sinderen, D.,Ventura, M.,Margolles, A.,Sanchez, B. (2012) 'Genome sequence of Parascardovia denticolens IPLA 20019, isolated from human breast milk'. J Bacteriol, 194 (1717):4776-74776 [Details] | |
| (2012) | 'Bacteria as vitamin suppliers to their host: a gut microbiota perspective' Leblanc, J. G.,Milani, C.,de Giori, G. S.,Sesma, F.,van Sinderen, D.,Ventura, M. (2012) 'Bacteria as vitamin suppliers to their host: a gut microbiota perspective'. Curr Opin Biotechnol, [Details] | |
| (2012) | 'Phages of lactic acid bacteria: The role of genetics in understanding phage-host interactions and their co-evolutionary processes' Mahony, J.,Ainsworth, S.,Stockdale, S.,van Sinderen, D. (2012) 'Phages of lactic acid bacteria: The role of genetics in understanding phage-host interactions and their co-evolutionary processes'. Virology, 434 (22):143-50143 [Details] | |
| (2012) | 'Lactococcal 936-type phages and dairy fermentation problems: from detection to evolution and prevention' Mahony, J.,Murphy, J.,van Sinderen, D. (2012) 'Lactococcal 936-type phages and dairy fermentation problems: from detection to evolution and prevention'. Front Microbiol, 3 [Details] | |
| (2012) | 'Structural aspects of the interaction of dairy phages with their host bacteria' Mahony, J.,van Sinderen, D. (2012) 'Structural aspects of the interaction of dairy phages with their host bacteria'. Viruses, 4 (99):1410-241410 [Details] | |
| (2012) | 'A bile-inducible membrane protein mediates bifidobacterial bile resistance' Ruiz, L.,O'Connell-Motherway, M.,Zomer, A.,de los Reyes-Gavilan, C. G.,Margolles, A.,van Sinderen, D. (2012) 'A bile-inducible membrane protein mediates bifidobacterial bile resistance'. Microb Biotechnol, 5 (44):523-35523 [Details] | |
| (2012) | 'An efficient and reproducible method for transformation of genetically recalcitrant bifidobacteria' Serafini, F.,Turroni, F.,Guglielmetti, S.,Gioiosa, L.,Foroni, E.,Sanghez, V.,Bartolomucci, A.,Motherway, M. O.,Palanza, P.,van Sinderen, D.,Ventura, M. (2012) 'An efficient and reproducible method for transformation of genetically recalcitrant bifidobacteria'. FEMS Microbiol Lett, 333 (22):146-52146 [Details] | |
| (2012) | 'Diversity of bifidobacteria within the infant gut microbiota' Turroni, F.,Peano, C.,Pass, D. A.,Foroni, E.,Severgnini, M.,Claesson, M. J.,Kerr, C.,Hourihane, J.,Murray, D.,Fuligni, F.,Gueimonde, M.,Margolles, A.,De Bellis, G.,O'Toole, P. W.,van Sinderen, D.,Marchesi, J. R.,Ventura, M. (2012) 'Diversity of bifidobacteria within the infant gut microbiota'. PLoS One, 7 (55) [Details] | |
| (2012) | 'Analysis of predicted carbohydrate transport systems encoded by Bifidobacterium bifidum PRL2010' Turroni, F.,Strati, F.,Foroni, E.,Serafini, F.,Duranti, S.,van Sinderen, D.,Ventura, M. (2012) 'Analysis of predicted carbohydrate transport systems encoded by Bifidobacterium bifidum PRL2010'. Appl Environ Microbiol, 78 (1414):5002-125002 [Details] | |
| (2012) | 'Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism' Veesler, D.,Spinelli, S.,Mahony, J.,Lichiere, J.,Blangy, S.,Bricogne, G.,Legrand, P.,Ortiz-Lombardia, M.,Campanacci, V.,van Sinderen, D.,Cambillau, C. (2012) 'Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism'. Proc Natl Acad Sci U S A, 109 (2323):8954-88954 [Details] | |
| (2012) | 'Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria' Ventura, M.,Turroni, F.,Motherway, M. O.,MacSharry, J.,van Sinderen, D. (2012) 'Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria'. Trends Microbiol, 20 (1010):467-76467 [Details] | |
| (2012) | 'Probiogenomics as a tool to obtain genetic insights into adaptation of probiotic bacteria to the human gut' Ventura, M.,Turroni, F.,van Sinderen, D. (2012) 'Probiogenomics as a tool to obtain genetic insights into adaptation of probiotic bacteria to the human gut'. Bioeng Bugs, 3 (22):73-973 [Details] | |
| (2012) | 'Selective carbohydrate utilization by lactobacilli and bifidobacteria' Watson, D.,Motherway, M. O.,Schoterman, M. H.,van Neerven, R. J.,Nauta, A.,van Sinderen, D. (2012) 'Selective carbohydrate utilization by lactobacilli and bifidobacteria'. J Appl Microbiol, [Details] | |
| (2012) | 'Comparative analysis of two antifungal Lactobacillus plantarum isolates and their application as bioprotectants in refrigerated foods' Crowley, S,Mahony, J,van Sinderen, D (2012) 'Comparative analysis of two antifungal Lactobacillus plantarum isolates and their application as bioprotectants in refrigerated foods'. Journal of Applied Microbiology, 113 :1417-1427 [DOI] [Details] | |
| (2012) | 'Gut microbiota composition correlates with diet and health in the elderly' Claesson, MJ,Jeffery, IB,Conde, S,Power, SE,O'Connor, EM,Cusack, S,Harris, HMB,Coakley, M,Lakshminarayanan, B,O'Sullivan, O,Fitzgerald, GF,Deane, J,O'Connor, M,Harnedy, N,O'Connor, K,O'Mahony, D,van Sinderen, D,Wallace, M,Brennan, L,Stanton, C,Marchesi, JR,Fitzgerald, AP,Shanahan, F,Hill, C,Ross, RP,O'Toole, PW (2012) 'Gut microbiota composition correlates with diet and health in the elderly'. Nature, 488 [DOI] [Details] | |
| (2012) | 'Fibrinogen-binding and platelet-aggregation activities of a Lactobacillus salivarius septicaemia isolate are mediated by a novel fibrinogen-binding protein' Collins, J,van Pijkeren, JP,Svensson, L,Claesson, MJ,Sturme, M,Li, Y,Cooney, JC,van Sinderen, D,Walker, AW,Parkhill, J,Shannon, O,O'Toole, PW (2012) 'Fibrinogen-binding and platelet-aggregation activities of a Lactobacillus salivarius septicaemia isolate are mediated by a novel fibrinogen-binding protein'. Molecular Microbiology, 85 :862-877 [DOI] [Details] | |
| (2012) | 'Genome Sequence of Parascardovia denticolens IPLA 20019, Isolated from Human Breast Milk' Gueimonde, M,Bottacini, F,van Sinderen, D,Ventura, M,Margolles, A,Sanchez, B (2012) 'Genome Sequence of Parascardovia denticolens IPLA 20019, Isolated from Human Breast Milk'. Journal of Bacteriology, 194 :4776-4777 [DOI] [Details] | |
| (2011) | 'Global Genome Transcription Profiling of Bifidobacterium bifidum PRL2010 under In Vitro Conditions and Identification of Reference Genes for Quantitative Real-Time PCR' Turroni, F,Foroni, E,Montanini, B,Viappiani, A,Strati, F,Duranti, S,Ferrarini, A,Delledonne, M,van Sinderen, D,Ventura, M (2011) 'Global Genome Transcription Profiling of Bifidobacterium bifidum PRL2010 under In Vitro Conditions and Identification of Reference Genes for Quantitative Real-Time PCR'. Applied and Environmental Microbiology, 77 :8578-8587 [DOI] [Details] | |
| (2011) | 'Composition, variability, and temporal stability of the intestinal microbiota of the elderly' Claesson, M. J.,Cusack, S.,O'Sullivan, O.,Greene-Diniz, R.,de Weerd, H.,Flannery, E.,Marchesi, J. R.,Falush, D.,Dinan, T.,Fitzgerald, G.,Stanton, C.,van Sinderen, D.,O'Connor, M.,Harnedy, N.,O'Connor, K.,Henry, C.,O'Mahony, D.,Fitzgerald, A. P.,Shanahan, F.,Twomey, C.,Hill, C.,Ross, R. P.,O'Toole, P. W. (2011) 'Composition, variability, and temporal stability of the intestinal microbiota of the elderly'. Proc Natl Acad Sci U S A, 108 :4586-45914586 [Details] | |
| (2011) | 'Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003' Motherway, MO,Fitzgerald, GF,van Sinderen, D (2011) 'Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003'. Microbial Biotechnology, 4 :403-416 [DOI] [Details] | |
| (2011) | 'Complete Genome Sequence of Bifidobacterium animalis subsp lactis BLC1' Bottacini, F,Dal Bello, F,Turroni, F,Milani, C,Duranti, S,Foroni, E,Viappiani, A,Strati, F,Mora, D,van Sinderen, D,Ventura, M (2011) 'Complete Genome Sequence of Bifidobacterium animalis subsp lactis BLC1'. Journal of Bacteriology, 193 :6387-6388 [DOI] [Details] | |
| (2011) | 'Genomics and ecological overview of the genus Bifidobacterium' Turroni, F,van Sinderen, D,Ventura, M (2011) 'Genomics and ecological overview of the genus Bifidobacterium'. International Journal of Food Microbiology, 149 :37-44 [DOI] [Details] | |
| (2011) | 'Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003' O'Connell Motherway, Mary and Fitzgerald, Gerald F and van Sinderen, Douwe (2011) 'Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003'. Microbial Biotechnology, 4 (3):403-416 [Details] | |
| (2011) | 'Isolation of a Virulent Lactobacillus brevis Phage and Its Application in the Control of Beer Spoilage' Deasy, T,Mahony, J,Neve, H,Heller, KJ,van Sinderen, D (2011) 'Isolation of a Virulent Lactobacillus brevis Phage and Its Application in the Control of Beer Spoilage'. Journal of Food Protection, 74 :2157-2161 [DOI] [Details] | |
| (2011) | 'Genome sequence of Bifidobacterium breve DPC 6330, a strain isolated from the human intestine' Guinane, Caitriona M and Barrett, Eoin and Fitzgerald, Gerald F and van Sinderen, Douwe and Ross, R Paul and Stanton, Catherine (2011) 'Genome sequence of Bifidobacterium breve DPC 6330, a strain isolated from the human intestine'. Journal of Bacteriology, 193 (23):6799-6800 [Details] | |
| (2011) | 'Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium' Foroni, E,Serafini, F,Amidani, D,Turroni, F,He, F,Bottacini, F,Motherway, MO,Viappiani, A,Zhang, ZD,Rivetti, C,van Sinderen, D,Ventura, M (2011) 'Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium'. Microbial Cell Factories, 10 [DOI] [Details] | |
| (2011) | 'Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor' Motherway, Mary O'Connell and Zomer, Aldert and Leahy, Sinead C. and Reunanen, Justus and Bottacini, Francesca and Claesson, Marcus J. and O'Brien, Frances and Flynn, Kiera and Casey, Patrick G. and Munoz, Jose Antonio Moreno and Kearney, Breda and Houston, Aileen M. and O'Mahony, Caitlin and Higgins, Des G. and Shanahan, Fergus and Palva, Airi and de Vos, Willem M. and Fitzgerald, Gerald F. and Ventura, Marco and O'Toole, Paul W. and van Sinderen, Douwe (2011) 'Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor'. Proceedings of The National Acadamy of Sciences, 108 (27):11217-11222 [DOI] [Details] | |
| (2011) | 'The impact of bacteriophages on probiotic bacteria and gut microbiota diversity' Ventura, M,Sozzi, T,Turroni, F,Matteuzzi, D,van Sinderen, D (2011) 'The impact of bacteriophages on probiotic bacteria and gut microbiota diversity'. Genes and Nutrition, 6 :205-207 [DOI] [Details] | |
| (2011) | 'Cellodextrin utilization by Bifidobacterium breve UCC2003' Pokusaeva, Karina and O'Connell-Motherway, Mary and Zomer, Aldert and MacSharry, John and Fitzgerald, Gerald F and van Sinderen, Douwe (2011) 'Cellodextrin utilization by Bifidobacterium breve UCC2003'. Applied and Environmental Microbiology, 77 (5):1681-1690 [Details] | |
| (2011) | 'Ability of Bifidobacterium breve To Grow on Different Types of Milk: Exploring the Metabolism of Milk through Genome Analysis' Turroni, F,Foroni, E,Serafini, F,Viappiani, A,Montanini, B,Bottacini, F,Ferrarini, A,Bacchini, PL,Rota, C,Delledonne, M,Ottonello, S,van Sinderen, D,Ventura, M (2011) 'Ability of Bifidobacterium breve To Grow on Different Types of Milk: Exploring the Metabolism of Milk through Genome Analysis'. Applied and Environmental Microbiology, 77 :7408-7417 [DOI] [Details] | |
| (2011) | 'Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor' Motherway, MO,Zomer, A,Leahy, SC,Reunanen, J,Bottacini, F,Claesson, MJ,O'Brien, F,Flynn, K,Casey, PG,Munoz, JAM,Kearney, B,Houston, AM,O'Mahony, C,Higgins, DG,Shanahan, F,Palva, A,de Vos, WM,Fitzgerald, GF,Ventura, M,O'Toole, PW,van Sinderen, D (2011) 'Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor'. Proceedings of The National Academy of Sciences of The United States of America, 108 :11217-11222 [DOI] [Details] | |
| (2011) | 'Composition, variability, and temporal stability of the intestinal microbiota of the elderly' Claesson, MJ,Cusack, S,O'Sullivan, O,Greene-Diniz, R,de Weerd, H,Flannery, E,Marchesi, JR,Falush, D,Dinan, T,Fitzgerald, G,Stanton, C,van Sinderen, D,O'Connor, M,Harnedy, N,O'Connor, K,Henry, C,O'Mahony, D,Fitzgerald, AP,Shanahan, F,Twomey, C,Hill, C,Ross, RP,O'Toole, PW (2011) 'Composition, variability, and temporal stability of the intestinal microbiota of the elderly'. Proceedings of The National Academy of Sciences of The United States of America, 108 :4586-4591 [DOI] [Details] | |
| (2011) | 'Biotechnological Production of Vitamin B2-Enriched Bread and Pasta' Capozzi, V,Menga, V,Digesu, AM,De Vita, P,van Sinderen, D,Cattivelli, L,Fares, C,Spano, G; (2011) 'Biotechnological Production of Vitamin B2-Enriched Bread and Pasta'. Rna-A Publication of The Rna Society, 59 :8013-8020 [DOI] [Details] | |
| (2011) | 'Expanding the molecular toolbox for Lactococcus lactis: construction of an inducible thioredoxin gene fusion expression system' Douillard, FP,O'Connell-Motherway, M,Cambillau, C,van Sinderen, D; (2011) 'Expanding the molecular toolbox for Lactococcus lactis: construction of an inducible thioredoxin gene fusion expression system'. Microbial Cell Factories, 10 [DOI] [Details] | |
| (2011) | 'Progress in genomics, metabolism and biotechnology of bifidobacteria' Cronin, M,Ventura, M,Fitzgerald, GF,van Sinderen, D; (2011) 'Progress in genomics, metabolism and biotechnology of bifidobacteria'. International Journal of Food Microbiology, 149 :4-18 [DOI] [Details] | |
| (2011) | 'Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor' O'Connell Motherway M, Zomer A, Leahy SC, Reunanen J, Bottacini F, Claesson MJ, O'Brien F, Flynn K, Casey PG, Munoz JA, Kearney B, Houston AM, O'Mahony C, Higgins DG, Shanahan F, Palva A, de Vos WM, Fitzgerald GF, Ventura M, O'Toole PW, van Sinderen D (2011) 'Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor'. Proceedings of The National Academy of Science Usa, 108 (27):11217-11222 [Details] | |
| (2011) | 'Construction of two Lactococcus lactis expression vectors combining the Gateway and the NIsin Controlled Expression systems' Douillard, FP,Mahony, J,Campanacci, V,Cambillau, C,van Sinderen, D (2011) 'Construction of two Lactococcus lactis expression vectors combining the Gateway and the NIsin Controlled Expression systems'. Plasmid, 66 :129-135 [DOI] [Details] | |
| (2011) | 'Complete Genome Sequence of Bifidobacterium bifidum S17' Zhurina, D,Zomer, A,Gleinser, M,Brancaccio, VF,Auchter, M,Waidmann, MS,Westermann, C,van Sinderen, D,Riedel, CU (2011) 'Complete Genome Sequence of Bifidobacterium bifidum S17'. Journal of Bacteriology, 193 :301-302 [DOI] [Details] | |
| (2011) | 'Carbohydrate metabolism in Bifidobacteria' Pokusaeva, Karina and Fitzgerald, Gerald F and van Sinderen, Douwe (2011) 'Carbohydrate metabolism in Bifidobacteria'. Genes and Nutrition, 6 (3):285-306 [Details] | |
| (2011) | 'Insights into Physiological and Genetic Mupirocin Susceptibility in Bifidobacteria' Serafini, F,Bottacini, F,Viappiani, A,Baruffini, E,Turroni, F,Foroni, E,Lodi, T,van Sinderen, D,Ventura, M (2011) 'Insights into Physiological and Genetic Mupirocin Susceptibility in Bifidobacteria'. Applied and Environmental Microbiology, 77 :3141-3146 [DOI] [Details] | |
| (2010) | 'Risk Assessment of Genetically Modified Lactic Acid Bacteria Using the Concept of Substantial Equivalence' LeBlanc, JG,Van Sinderen, D,Hugenholtz, J,Piard, JC,Sesma, F,de Giori, GS (2010) 'Risk Assessment of Genetically Modified Lactic Acid Bacteria Using the Concept of Substantial Equivalence'. Current Microbiology, 61 :590-595 [DOI] [Details] | |
| (2010) | 'Characterization of the Serpin-Encoding Gene of Bifidobacterium breve 210B' Turroni, F,Foroni, E,Motherway, MO,Bottacini, F,Giubellini, V,Zomer, A,Ferrarini, A,Delledonne, M,Zhang, Z,van Sinderen, D,Ventura, M (2010) 'Characterization of the Serpin-Encoding Gene of Bifidobacterium breve 210B'. Applied and Environmental Microbiology, 76 :3206-3219 [DOI] [Details] | |
| (2010) | 'Comparative genomics of the genus Bifidobacterium' Bottacini, F,Medini, D,Pavesi, A,Turroni, F,Foroni, E,Riley, D,Giubellini, V,Tettelin, H,van Sinderen, D,Ventura, M (2010) 'Comparative genomics of the genus Bifidobacterium'. Microbiology-SGM, 156 :3243-3254 [DOI] [Details] | |
| (2010) | 'Ribose utilization by the human commensal Bifidobacterium breve UCC2003' Pokusaeva, Karina and Neves, Ana Rute and Zomer, Aldert and O'Connell-Motherway, Mary and MacSharry, John and Curley, Peter and Fitzgerald, Gerald F and Van Sinderen, Douwe (2010) 'Ribose utilization by the human commensal Bifidobacterium breve UCC2003'. Microbial Biotechnology, 3 (3):311-323 [Details] | |
| (2010) | 'Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging' Turroni, F,Bottacini, F,Foroni, E,Mulder, I,Kim, JH,Zomer, A,Sanchez, B,Bidossi, A,Ferrarini, A,Giubellini, V,Delledonne, M,Henrissat, B,Coutinho, P,Oggioni, M,Fitzgerald, GF,Mills, D,Margolles, A,Kelly, D,van Sinderen, D,Ventura, M (2010) 'Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging'. Proceedings of The National Academy of Sciences of The United States of America, 107 :19514-19519 [DOI] [Details] | |
| (2010) | 'Ribose utilization by the human commensal Bifidobacterium breve UCC2003' Pokusaeva, K,Neves, AR,Zomer, A,O'Connell-Motherway, M,MacSharry, J,Curley, P,Fitzgerald, GF,van Sinderen, D; (2010) 'Ribose utilization by the human commensal Bifidobacterium breve UCC2003'. Microbial Biotechnology, 3 :311-323 [DOI] [Details] | |
| (2010) | 'Analyses of bifidobacterial prophage-like sequences' Ventura, M,Turroni, F,Foroni, E,Duranti, S,Giubellini, V,Bottacini, F,van Sinderen, D (2010) 'Analyses of bifidobacterial prophage-like sequences'. Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology, 98 :39-50 [DOI] [Details] | |
| (2010) | 'Orally administered bifidobacteria as vehicles for delivery of agents to systemic tumors' Cronin, M; Morrissey, D; Rajendran, S; El Mashad, SM; van Sinderen, D; O'Sullivan, GC; Tangney, M; (2010) 'Orally administered bifidobacteria as vehicles for delivery of agents to systemic tumors'. Molecular Therapy, 18 (7):1397-1407 [DOI] [Details] | |
| (2010) | 'Composition, variability, and temporal stability of the intestinal microbiota of the elderly' Claesson, MJ; Cusack, S; O'Sullivan, O; Greene-Diniz, R; de Weerd, H; Flannery, E; Marchesi, JR; Falush, D; Dinan, T; Fitzgerald, G; Stanton, C; van Sinderen, D; O'Connor, M; Harnedy, N; O'Connor, K; Henry, C; O'Mahony, D; Fitzgerald, AP; Shanahan, F; Twomey, C;Hill, C; Ross, RP; O'Toole, PW; (2010) 'Composition, variability, and temporal stability of the intestinal microbiota of the elderly'. Proceedings of The National Academy of Science Usa, [Details] | |
| (2010) | 'Genome analysis of the Clostridium difficile phage Phi CD6356, a temperate phage of the Siphoviridae family' Horgan, M; O'Sullivan, O; Coffey, A; itzgerald, GF; van Sinderen, D; McAuliffe, O; Ross, RP; (2010) 'Genome analysis of the Clostridium difficile phage Phi CD6356, a temperate phage of the Siphoviridae family'. Gene, 462 :34-43 [DOI] [Details] | |
| (2010) | 'Solution and electron microscopy characterization of lactococcal phage baseplates expressed in Escherichia coli' Campanacci, V,Veesler, D,Lichiere, J,Blangy, S,Sciara, G,Moineau, S,van Sinderen, D,Bron, P,Cambillau, C; (2010) 'Solution and electron microscopy characterization of lactococcal phage baseplates expressed in Escherichia coli'. Rna-A Publication of The Rna Society, 172 :75-84 [DOI] [Details] | |
| (2010) | 'Genome analysis of the< i> Clostridium difficile phage $\Phi$CD6356, a temperate phage of the< i> Siphoviridae family' Horgan, Marianne and O'Sullivan, Orla and Coffey, Aidan and Fitzgerald, Gerald F and van Sinderen, Douwe and McAuliffe, Olivia and Ross, R Paul (2010) 'Genome analysis of the< i> Clostridium difficile phage $\Phi$CD6356, a temperate phage of the< i> Siphoviridae family'. Gene, 462 (1):34-43 [Details] | |
| (2009) | 'Comparative Analyses of Prophage-Like Elements Present in Bifidobacterial Genomes' Ventura, M,Turroni, F,Lima-Mendez, G,Foroni, E,Zomer, A,Duranti, S,Giubellini, V,Bottacini, F,Horvath, P,Barrangou, R,Sela, DA,Mills, DA,van Sinderen, D (2009) 'Comparative Analyses of Prophage-Like Elements Present in Bifidobacterial Genomes'. Applied and Environmental Microbiology, 75 :6929-6936 [DOI] [Details] | |
| (2009) | 'Exploring the Diversity of the Bifidobacterial Population in the Human Intestinal Tract' Turroni, F.,Foroni, E.,Pizzetti, P.,Giubellini, V.,Ribbera, A.,Merusi, P.,Cagnasso, P.,Bizzarri, B.,de'Angelis, G. L.,Shanahan, F.,van Sinderen, D.,Ventura, M. (2009) 'Exploring the Diversity of the Bifidobacterial Population in the Human Intestinal Tract'. Appl Environ Microbiol, 75 (66):1534-15451534 [Details] | |
| (2009) | 'Microbiomic Analysis of The Bifidobacterial Population In The Human Distal Gut' Turroni, F, Marchesi, JR, Foroni, E, Gueimonde, M, Shanahan, F, Margolles, A, van Sinderen, D, Ventura, M; (2009) 'Microbiomic Analysis of The Bifidobacterial Population In The Human Distal Gut'. ISME Journal, 3 (6):745-751 [DOI] [Details] | |
| (2009) | 'An Interactive Regulatory Network Controls Stress Response in Bifidobacterium breve UCC2003' Zomer, Aldert; Fernandez, Matilde; Kearney, Breda; Fitzgerald, Gerald F; Ventura, Marco; van Sinderen, Douwe; (2009) 'An Interactive Regulatory Network Controls Stress Response in Bifidobacterium breve UCC2003'. The Journal of Bacteriology, 191 (22):7039-7049 [DOI] [Details] | |
| (2009) | 'Bile-Inducible Efflux Transporter From Bifidobacterium Longum Ncc2705, Conferring Bile Resistance' Gueimonde, M, Garrigues, C, van Sinderen, D, de los Reyes-Gavilan, CG, Margolles, A; (2009) 'Bile-Inducible Efflux Transporter From Bifidobacterium Longum Ncc2705, Conferring Bile Resistance'. Applied and Environmental Microbiology, 75 (10):3153-3160 [DOI] [Details] | |
| (2009) | 'Microbial Diversity In The Human Intestine and Novel Insights From Metagenomics' Ventura, M, Turroni, F, Canchaya, C, Vaughan, EE, O'Toole, PW, van Sinderen, D; (2009) 'Microbial Diversity In The Human Intestine and Novel Insights From Metagenomics'. Frontiers In Bioscience, 14 (NA):3214-3863 [DOI] [CORA Link] [Details] | |
| (2009) | 'Characterization of two novel $\alpha$-glucosidases from Bifidobacterium breve UCC2003' Pokusaeva, Karina and O'Connell-Motherway, Mary and Zomer, Aldert and Fitzgerald, Gerald F and van Sinderen, Douwe (2009) 'Characterization of two novel $\alpha$-glucosidases from Bifidobacterium breve UCC2003'. Applied and Environmental Microbiology, 75 (4):1135-1143 [Details] | |
| (2009) | 'Exploring the Diversity of the Bifidobacterial Population in the Human Intestinal Tract' Turroni, F,Foroni, E,Pizzetti, P,Giubellini, V,Ribbera, A,Merusi, P,Cagnasso, P,Bizzarri, B,de'Angelis, GL,Shanahan, F,van Sinderen, D,Ventura, M (2009) 'Exploring the Diversity of the Bifidobacterial Population in the Human Intestinal Tract'. Applied and Environmental Microbiology, 75 :1534-1545 [DOI] [Details] | |
| (2009) | 'The Bifidobacterium dentium Bd1 Genome Sequence Reflects Its Genetic Adaptation to the Human Oral Cavity' Ventura, M,Turroni, F,Zomer, A,Foroni, E,Giubellini, V,Bottacini, F,Canchaya, C,Claesson, MJ,He, F,Mantzourani, M,Mulas, L,Ferrarini, A,Gao, BL,Delledonne, M,Henrissat, B,Coutinho, P,Oggioni, M,Gupta, RS,Zhang, ZD,Beighton, D,Fitzgerald, GF,O'Toole, PW,van Sinderen, D (2009) 'The Bifidobacterium dentium Bd1 Genome Sequence Reflects Its Genetic Adaptation to the Human Oral Cavity'. PLoS genetics, 5 [DOI] [Details] | |
| (2009) | 'Bifidobacteria: from ecology to genomics' Turroni, F,van Sinderen, D,Ventura, M (2009) 'Bifidobacteria: from ecology to genomics'. Frontiers In Bioscience, 14 :4673-4684 [DOI] [Details] | |
| (2009) | 'An Interactive Regulatory Network Controls Stress Response in Bifidobacterium breve UCC2003' Zomer, A,Fernandez, M,Kearney, B,Fitzgerald, GF,Ventura, M,van Sinderen, D (2009) 'An Interactive Regulatory Network Controls Stress Response in Bifidobacterium breve UCC2003'. Journal of Bacteriology, 191 :7039-7049 [DOI] [Details] | |
| (2009) | 'Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003' Motherway, MO,O'Driscoll, J,Fitzgerald, GF,van Sinderen, D (2009) 'Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003'. Microbial Biotechnology, 2 :321-332 [DOI] [Details] | |
| (2009) | 'Genome-scale analyses of health-promoting bacteria: probiogenomics' Ventura, M,O'Flaherty, S,Claesson, MJ,Turroni, F,Klaenhammer, TR,van Sinderen, D,O'Toole, PW (2009) 'Genome-scale analyses of health-promoting bacteria: probiogenomics'. Nature Reviews. Microbiology, 7 :61-77 [DOI] [Details] | |
| (2008) | 'Development of a luciferase-based reporter system to monitor Bifidobacterium breve UCC2003 persistence in mice' Cronin, Michelle and Sleator, Roy D and Hill, Colin and Fitzgerald, Gerald F and van Sinderen, Douwe (2008) 'Development of a luciferase-based reporter system to monitor Bifidobacterium breve UCC2003 persistence in mice'. BMC Microbiology, 8 (1) [Details] | |
| (2008) | 'Identification and characterization of lactococcal-prophage-carried superinfection exclusion genes' Mahony, Jennifer and McGrath, Stephen and Fitzgerald, Gerald F and van Sinderen, Douwe (2008) 'Identification and characterization of lactococcal-prophage-carried superinfection exclusion genes'. Applied and Environmental Microbiology, 74 (20):6206-6215 [Details] | |
| (2008) | 'Characterization of ApuB, an extracellular type II amylopullulanase from Bifidobacterium breve UCC2003' Motherway, Mary O'Connell and Fitzgerald, Gerald F and Neirynck, Sabine and Ryan, Sinead and Steidler, Lothar and van Sinderen, Douwe (2008) 'Characterization of ApuB, an extracellular type II amylopullulanase from Bifidobacterium breve UCC2003'. Applied and Environmental Microbiology, 74 (20):6271-6279 [Details] | |
| (2008) | 'Characterization of ApuB, an extracellular type II amylopullulanase from Bifidobacterium breve UCC2003' Motherway, MO,Fitzgerald, GF,Neirynck, S,Ryan, S,Steidler, L,van Sinderen, D; (2008) 'Characterization of ApuB, an extracellular type II amylopullulanase from Bifidobacterium breve UCC2003'. Applied and Environmental Microbiology, 74 :6271-6279 [DOI] [Details] | |
| (2008) | 'Lactic Acid Bacteria With Potential to Eliminate Fungal Spoilage In Foods' Rouse, S, Harnett, D, Vaughan, A, van Sinderen, D; (2008) 'Lactic Acid Bacteria With Potential to Eliminate Fungal Spoilage In Foods'. Journal of Applied Microbiology, 104 (3):915-923 [DOI] [Details] | |
| (2008) | 'Development of A Luciferase-Based Reporter System to Monitor Bifidobacterium Breve Ucc2003 Persistence In Mice' Cronin, M, Sleator, RD, Hill, C, Fitzgerald, GF, van Sinderen, D; (2008) 'Development of A Luciferase-Based Reporter System to Monitor Bifidobacterium Breve Ucc2003 Persistence In Mice'. BMC Microbiology, 8 (NA) [DOI] [Details] | |
| (2008) | 'A topological model of the baseplate of lactococcal phage Tuc2009' Sciara, G,Blangy, S,Siponen, M,Mc Grath, S,van Sinderen, D,Tegoni, M,Cambillau, C,Campanacci, V; (2008) 'A topological model of the baseplate of lactococcal phage Tuc2009'. The Journal of Biological Chemistry, 283 :2716-2723 [DOI] [Details] | |
| (2008) | 'Identification and characterization of lactococcal-prophage-carried superinfection exclusion genes' Mahony, J,McGrath, S,Fitzgerald, GF,van Sinderen, D; (2008) 'Identification and characterization of lactococcal-prophage-carried superinfection exclusion genes'. Applied and Environmental Microbiology, 74 :6206-6215 [DOI] [Details] | |
| (2008) | 'Lactobacillus phylogenomics - towards a reclassification of the genus' Claesson, MJ,van Sinderen, D,O'Toole, PW; (2008) 'Lactobacillus phylogenomics - towards a reclassification of the genus'. International Journal of Systematic and Evolutionary Microbiology, 58 :2945-2954 [DOI] [Details] | |
| (2008) | 'Lactobacillus phylogenomics--towards a reclassification of the genus' Claesson MJ, van Sinderen D, O'Toole PW (2008) 'Lactobacillus phylogenomics--towards a reclassification of the genus'. International Journal of Systematic and Evolutionary Microbiology, [Details] | |
| (2008) | 'Characterization of endogenous plasmids from Lactobacillus salivarius UCC118' Fang, Fang and Flynn, Sarah and Li, Yin and Claesson, Marcus J. and van Pijkeren, Jan-Peter and Collins, J. Kevin and van Sinderen, Douwe and O'Toole, Paul W. (2008) 'Characterization of endogenous plasmids from Lactobacillus salivarius UCC118'. Applied and Environmental Microbiology, 74 (10):3216-3228 [DOI] [Details] | |
| (2008) | 'Lactobacillus hordei sp nov., a bacteriocinogenic strain isolated from malted barley' Rouse, S,Canchaya, C,van Sinderen, D (2008) 'Lactobacillus hordei sp nov., a bacteriocinogenic strain isolated from malted barley'. International Journal of Systematic and Evolutionary Microbiology, 58 :2013-2017 [DOI] [Details] | |
| (2007) | 'From bacterial genome to functionality; case bifidobacteria' Ventura, Marco and O'Connell-Motherway, Mary and Leahy, Sinead and Moreno-Munoz, Jose Antonio and Fitzgerald, Gerald F and van Sinderen, Douwe (2007) 'From bacterial genome to functionality; case bifidobacteria'. International Journal of Food Microbiology, 120 (1):2-12 [Details] | |
| (2007) | 'The genus Lactobacillus--a genomic basis for understanding its diversity' Claesson MJ, van Sinderen D, O'Toole PW (2007) 'The genus Lactobacillus--a genomic basis for understanding its diversity'. Fems Microbiology Letts, [Details] | |
| (2007) | 'Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylura' Ventura, Marco and Canchaya, Carlos and Tauch, Andreas and Chandra, Govind and Fitzgerald, Gerald F. and Chater, Keith F. and van Sinderen, Douwe; (2007) 'Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylura'. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 71 (3) [DOI] [Details] | |
| (2007) | 'Comparative analyses of prophage-like elements present in two Lactococcus lactis strains' Ventura, M,Zomer, A,Canchaya, C,O'Connell-Motherway, M,Kuipers, O,Turroni, F,Ribbera, A,Foroni, E,Buist, G,Wegmann, U,Shearman, C,Gasson, MJ,Fitzgerald, GF,Kok, J,van Sinderen, D (2007) 'Comparative analyses of prophage-like elements present in two Lactococcus lactis strains'. Applied and Environmental Microbiology, 73 :7771-7780 [DOI] [Details] | |
| (2007) | 'Exploiting Bifidobacterium genomes: The molecular basis of stress response' Lindner, Juliano De Dea and Canchaya, Carlos and Zhang, Ziding and Neviani, Erasmo and Fitzgerald, Gerald F. and van Sinderen, Douwe and Ventura, Marco; (2007) 'Exploiting Bifidobacterium genomes: The molecular basis of stress response'. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 120 (1-2):13-24 [DOI] [Details] | |
| (2007) | 'From bacterial genome to functionality; case bifidobacteria' Ventura, Marco and O'Connell-Motherway, Mary and Leahy, Sinead and Moreno-Munoz, Jose Antonio and Fitzgerald, Gerald F. and van Sinderen, Douwe; (2007) 'From bacterial genome to functionality; case bifidobacteria'. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 120 (1-2):2-12 [DOI] [Details] | |
| (2007) | 'Distribution of megaplasmids in Lactobacillus salivarius and other Lactobacilli' Li, Y,Canchaya, C,Fang, F,Raftis, E,Ryan, KA,van Pijkeren, JP,van Sinderen, D,O'Toole, PW; (2007) 'Distribution of megaplasmids in Lactobacillus salivarius and other Lactobacilli'. Journal of Bacteriology, 189 :6128-6139 [DOI] [Details] | |
| (2007) | 'Molecular characterization of hsp20, encoding a small heat shock protein of Bifidobacterium breve UCC2003' Ventura, M,Canchaya, C,Zhang, Z,Fitzgerald, GF,van Sinderen, D; (2007) 'Molecular characterization of hsp20, encoding a small heat shock protein of Bifidobacterium breve UCC2003'. Applied and Environmental Microbiology, 73 :4695-4703 [DOI] [Details] | |
| (2007) | 'Improvement of the quality and shelf life of wheat bread by fermentation with the antifungal strain Lactobacillus plantarum FST 1.7' Dal Bello, F,Clarke, CI,Ryan, LAM,Ulmer, H,Schober, TJ,Strom, K,Sjogren, J,van Sinderen, D,Schnurer, J,Arendt, EK; (2007) 'Improvement of the quality and shelf life of wheat bread by fermentation with the antifungal strain Lactobacillus plantarum FST 1.7'. Journal of Cereal Science, 45 :309-318 [DOI] [Details] | |
| (2007) | 'The genus Lactobacillus - a genomic basis for understanding its diversity' Claesson, M.J., van Sinderen, D., and P.W. O'Toole. ; (2007) 'The genus Lactobacillus - a genomic basis for understanding its diversity'. Fems Microbiology Letters, 269 :22-28 [Details] | |
| (2007) | 'Identification and characterization of a fructose phosphotransferase system in Bifidobacterium breve UCC2003' Maze, A,O'Connell-Motherway, M,Fitzgerald, GF,Deutscher, J,van Sinderen, D; (2007) 'Identification and characterization of a fructose phosphotransferase system in Bifidobacterium breve UCC2003'. Applied and Environmental Microbiology, 73 :545-553 [DOI] [Details] | |
| (2007) | 'Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria (vol 91, pg 351, 2007)' Ventura, Marco and Canchaya, Carlos and Fitzgerald, Gerald F. and Gupta, Radhey S. and van Sinderen, Douwe; (2007) 'Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria (vol 91, pg 351, 2007)'. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 92 (2) [DOI] [Details] | |
| (2007) | 'Molecular Dissection of A Bifidobacterial Replicon' Cronin, M, Knobel, M, O'Connell-Motherway, M, Fitzgerald, GF, van Sinderen, D; (2007) 'Molecular Dissection of A Bifidobacterial Replicon'. Applied and Environmental Microbiology, 73 (24):7858-7866 [DOI] [Details] | |
| (2007) | 'Molecular dissection of a bifidobacterial replicon' Cronin, Michelle and Knobel, Moritz and O'Connell-Motherway, Mary and Fitzgerald, Gerald F and van Sinderen, Douwe (2007) 'Molecular dissection of a bifidobacterial replicon'. Applied and Environmental Microbiology, 73 (24):7858-7866 [Details] | |
| (2007) | 'Characterization of plasmid pASV479 from< i> Bifidobacterium pseudolongum subsp.< i> globosum and its use for expression vector construction' Sangrador-Vegas, A and Stanton, C and Van Sinderen, D and Fitzgerald, GF and Ross, RP (2007) 'Characterization of plasmid pASV479 from< i> Bifidobacterium pseudolongum subsp.< i> globosum and its use for expression vector construction'. Plasmid, 58 (2):140-147 [Details] | |
| (2007) | 'Distribution of megaplasmids in Lactobacillus salivarius and other Lactobacilli' Li, Yin and Canchaya, Carlos and Fang, Fang and Raftis, Emma and Ryan, Kieran A. and van Pijkeren, Jan-Peter and van Sinderen, Douwe and O'Toole, Paul W. (2007) 'Distribution of megaplasmids in Lactobacillus salivarius and other Lactobacilli'. Journal of Bacteriology, 189 (17):6128-6139 [DOI] [Details] | |
| (2007) | 'Exploiting< i> Bifidobacterium genomes: The molecular basis of stress response' De Dea Lindner, Juliano and Canchaya, Carlos and Zhang, Ziding and Neviani, Erasmo and Fitzgerald, Gerald F and van Sinderen, Douwe and Ventura, Marco (2007) 'Exploiting< i> Bifidobacterium genomes: The molecular basis of stress response'. International Journal of Food Microbiology, 120 (1):13-24 [Details] | |
| (2007) | 'Molecular characterization of hsp20, encoding a small heat shock protein of Bifidobacterium breve UCC2003' Ventura, Marco and Canchaya, Carlos and Zhang, Ziding and Fitzgerald, Gerald F and van Sinderen, Douwe (2007) 'Molecular characterization of hsp20, encoding a small heat shock protein of Bifidobacterium breve UCC2003'. Applied and Environmental Microbiology, 73 (14):4695-4703 [Details] | |
| (2007) | 'High-throughput isolation of bacteriocin-producing lactic acid bacteria, with potential application in the brewing industry' Rouse, S,Sun, FN,Vaughan, A,van Sinderen, D (2007) 'High-throughput isolation of bacteriocin-producing lactic acid bacteria, with potential application in the brewing industry'. Journal of The Institute of Brewing, 113 :256-262 [Details] | |
| (2007) | 'Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum' Ventura, Marco and Canchaya, Carlos and Tauch, Andreas and Chandra, Govind and Fitzgerald, Gerald F and Chater, Keith F and van Sinderen, Douwe (2007) 'Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum'. Microbiology and Molecular Biology Reviews, 71 (3):495-548 [Details] | |
| (2007) | 'Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria' Ventura, Marco and Canchaya, Carlos and Fitzgerald, Gerald F and Gupta, Radhey S and van Sinderen, Douwe (2007) 'Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria'. Antonie Van Leeuwenhoek, 91 (4):351-372 [Details] | |
| (2007) | 'Bacteriophages in dairy products: pros and cons' Mc Grath, Stephen and Fitzgerald, Gerald F and van Sinderen, Douwe (2007) 'Bacteriophages in dairy products: pros and cons'. Biotechnology journal, 2 (4):450-455 [Details] | |
| (2007) | 'Molecular characterization of the small heat shock-encoding gene, hsp20, from Bifidobacterium breve UCC2003' Ventura, Marco and Canchaya, Carlos and Zhang, Ziding and Fitzgerald, Gerald F and van Sinderen, Douwe (2007) 'Molecular characterization of the small heat shock-encoding gene, hsp20, from Bifidobacterium breve UCC2003'. Applied and Environmental Microbiology, [Details] | |
| (2007) | 'Characterization of plasmid pASV479 from Bifidobacterium pseudolongum subsp globosum and its use for expression vector construction' Sangrador-Vegas, A,Stanton, C,van Sinderen, D,Fitzgerald, GF,Ross, RP (2007) 'Characterization of plasmid pASV479 from Bifidobacterium pseudolongum subsp globosum and its use for expression vector construction'. Plasmid, 58 :140-147 [DOI] [Details] | |
| (2006) | 'Diversity of the genus Lactobacillus revealed by comparative genomics of five species' Canchaya, Carlos and Claesson, Marcus J and Fitzgerald, Gerald F and Van Sinderen, Douwe and O'Toole, Paul W (2006) 'Diversity of the genus Lactobacillus revealed by comparative genomics of five species'. BMC Microbiology, 152 (11):3185-3196 [Details] | |
| (2006) | 'Multireplicon genome architecture of Lactobacillus salivarius' Claesson, M. J.,Li, Y.,Leahy, S.,Canchaya, C.,van Pijkeren, J. P.,Cerdeno-Tarraga, A. M.,Parkhill, J.,Flynn, S.,O'Sullivan, G. C.,Collins, J. K.,Higgins, D.,Shanahan, F.,Fitzgerald, G. F.,van Sinderen, D.,O'Toole, P. W. (2006) 'Multireplicon genome architecture of Lactobacillus salivarius'. Proc Natl Acad Sci U S Aproc Natl Acad Sci U S A, 103 (17):6718-6723 [Details] | |
| (2006) | 'Two Membrane Proteins From Bifidobacterium Breve Ucc2003 Constitute An Abc-Type Multidrug Transporter' Margolles, A, Florez, AB, Moreno, JA, van Sinderen, D, de los Reyes-Gavilan, CG; (2006) 'Two Membrane Proteins From Bifidobacterium Breve Ucc2003 Constitute An Abc-Type Multidrug Transporter'. Microbiology-SGM, 152 (NA):3497-3505 [DOI] [Details] | |
| (2006) | 'Polyphasic Analysis Indicates That Lactobacillus Salivarius Subsp Salivarius and Lactobacillus Salivarius Subsp Salicinius Do Not Merit Separate Subspecies Status' Li, Y, Raftis, E, Canchaya, C, Fitzgerald, GF, van Sinderen, D, O'Toole, PW; (2006) 'Polyphasic Analysis Indicates That Lactobacillus Salivarius Subsp Salivarius and Lactobacillus Salivarius Subsp Salicinius Do Not Merit Separate Subspecies Status'. International Journal of Systematic and Evolutionary Microbiology, 56 (NA):2397-2403 [DOI] [Details] | |
| (2006) | 'A genetic dissection of the LlaJI restriction cassette reveals insights on a novel bacteriophage resistance system' O'Driscoll, Jonathan and Heiter, Daniel F and Wilson, Geoffrey G and Fitzgerald, Gerald F and Roberts, Richard and van Sinderen, Douwe (2006) 'A genetic dissection of the LlaJI restriction cassette reveals insights on a novel bacteriophage resistance system'. BMC Microbiology, 6 (1) [Details] | |
| (2006) | 'Polyphasic analysis indicates that Lactobacillus salivarius subsp. salivarius and Lactobacillus salivarius subsp. salicinius do not merit separate subspecies status' Li, Yin and Raftis, Emma and Canchaya, Carlos and Fitzgerald, Gerald F and van Sinderen, Douwe and O'Toole, Paul W (2006) 'Polyphasic analysis indicates that Lactobacillus salivarius subsp. salivarius and Lactobacillus salivarius subsp. salicinius do not merit separate subspecies status'. International Journal of Systematic and Evolutionary Microbiology, 56 (10):2397-2403 [Details] | |
| (2006) | 'Safety and tolerability of the probiotic organism Bifidobacterium infantis 35624: Clinical experience and molecular basis' Quigley, E. M.,Whorwell, P. J.,Shanahan, F.,Vansinderen, D.,Xu, J.,Altringer, L.,O'Mahony, L.,Guarner, F. (2006) 'Safety and tolerability of the probiotic organism Bifidobacterium infantis 35624: Clinical experience and molecular basis'. Gastroenterology, 130 (44) [Details] | |
| (2006) | 'Comparative genomics and transcriptional analysis of prophages identified in the Genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei' Ventura, M,Canchaya, C,Bernini, V,Altermann, E,Barrangou, R,McGrath, S,Claesson, MJ,Li, Y,Leahy, S,Walker, CD,Zink, R,Neviani, E,Steele, J,Broadbent, J,Klaenhammer, TR,Fitzgerald, GF,O'Toole, PW,van Sinderen, D; (2006) 'Comparative genomics and transcriptional analysis of prophages identified in the Genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei'. Applied and Environmental Microbiology, 72 :3130-3146 [DOI] [Details] | |
| (2006) | 'Sequence and comparative genomic analysis of lactococcal bacteriophages jj50, 712 and P008: evolutionary insights into the 936 phage species' Mahony, J,Deveau, H,Mc Grath, S,Ventura, M,Canchaya, C,Moineau, S,Fitzgerald, GF,van Sinderen, D; (2006) 'Sequence and comparative genomic analysis of lactococcal bacteriophages jj50, 712 and P008: evolutionary insights into the 936 phage species'. Fems Microbiology Letters, 261 :253-261 [DOI] [Details] | |
| (2006) | 'Identification of the lower baseplate protein as the antireceptor of the temperate lactococcal bacteriophages TP901-1 and Tuc2009' Vegge, CS,Vogensen, FK,McGrath, S,Neve, H,van Sinderen, D,Brondsted, L; (2006) 'Identification of the lower baseplate protein as the antireceptor of the temperate lactococcal bacteriophages TP901-1 and Tuc2009'. Journal of Bacteriology, 188 :55-63 [DOI] [Details] | |
| (2006) | 'Characterization of the lytic-lysogenic switch of the lactococcal bacteriophage Tuc2009' Kenny, JG,Leach, S,de la Hoz, AB,Venema, G,Kok, J,Fitzgerald, GF,Nauta, A,Alonso, JC,van Sinderen, D (2006) 'Characterization of the lytic-lysogenic switch of the lactococcal bacteriophage Tuc2009'. Virology, 347 :434-446 [DOI] [Details] | |
| (2006) | 'Characterization of the lytic-lysogenic switch of the lactococcal bacteriophage Tuc2009' Kenny JG, Leach S, de la Hoz AB, Venema G, Kok J, Fitzgerald GF, Nauta A, Alonso JC, van Sinderen D; (2006) 'Characterization of the lytic-lysogenic switch of the lactococcal bacteriophage Tuc2009'. Virology, 347 (2):434-446 [DOI] [Details] | |
| (2006) | 'Anatomy of a lactococcal phage tail' Mc Grath S, Neve H, Seegers JF, Eijlander R, Vegge CS, Br�ndsted L, Heller KJ, Fitzgerald GF, Vogensen FK, van Sinderen D; (2006) 'Anatomy of a lactococcal phage tail'. Journal of Bacteriology, 188 (11):3972-3982 [DOI] [Details] | |
| (2006) | 'Comparative and functional analysis of sortase-dependent proteins in the predicted secretome of Lactobacillus salivarius UCC118' van Pijkeren JP, Canchaya C, Ryan KA, Li Y, Claesson MJ, Sheil B, Steidler L, O'Mahony L, Fitzgerald GF, van Sinderen D, O'Toole PW; (2006) 'Comparative and functional analysis of sortase-dependent proteins in the predicted secretome of Lactobacillus salivarius UCC118'. Applied and Environmental Microbiology, 72 (6):4143-4153 [DOI] [Details] | |
| (2006) | 'Screening for and identification of starch-, amylopectin-, and pullulan-degrading activities in bifidobacterial strains' Ryan, SM,Fitzgerald, GF,van Sinderen, D; (2006) 'Screening for and identification of starch-, amylopectin-, and pullulan-degrading activities in bifidobacterial strains'. Applied and Environmental Microbiology, 72 :5289-5296 [DOI] [Details] | |
| (2006) | 'Sequence analysis of the lactococcal plasmid pNP40: a mobile replicon for coping with environmental hazards' O'Driscoll J, Glynn F, Fitzgerald GF, van Sinderen D; (2006) 'Sequence analysis of the lactococcal plasmid pNP40: a mobile replicon for coping with environmental hazards'. Journal of Bacteriology, 188 (18):6629-6639 [DOI] [Details] | |
| (2006) | 'Screening for and identification of starch-, amylopectin-, and pullulan-degrading activities in bifidobacterial strains' Ryan, Sin\'ead M and Fitzgerald, Gerald F and van Sinderen, Douwe (2006) 'Screening for and identification of starch-, amylopectin-, and pullulan-degrading activities in bifidobacterial strains'. Applied and Environmental Microbiology, 72 (8):5289-5296 [Details] | |
| (2006) | 'Multi-replicon genome architecture of Lactobacillus salivarius' Claesson, M.J. Li, Y. Leahy, S. Canchaya, C. van Pijkeren, J-P. Cerdeño-Tárraga, A.M. Parkhill, J. Flynn, S. O’Sullivan, G.C. Collins, J.K. Higgins, D. Shanahan, F. Fitzgerald, G.F. van Sinderen D. O'Toole, P.W.; (2006) 'Multi-replicon genome architecture of Lactobacillus salivarius'. Proceedings of The National Acadamy of Sciences, 103 (*):6718-6723 [Details] | |
| (2006) | 'Genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius and Lactobacillus casei' Ventura, M. Canchaya, C. Bernini, V. Altermann, E. Barrangou, R. McGrath, S. Claesson, M. Li, Y. Leahy, S. Walker, C.D. Zink, R. Neviani, E. Steele, J. Broadbent, J. Klaenhammer, T.R. Fitzgerald, F.F. O'Toole, P.W. van Sinderen, D.; (2006) 'Genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius and Lactobacillus casei'. Applied and Environmental Microbiology, 72 (*):3130-3146 [Details] | |
| (2006) | 'Diversity of the genus Lactobacillus revealed by comparative genomics of five species' Canchaya, C. Claesson, M.J. Fitzgerald, G.F. van Sinderen, D. O'Toole, P.W.; (2006) 'Diversity of the genus Lactobacillus revealed by comparative genomics of five species'. Microbiology, 152 (*):3185-3196 [Details] | |
| (2006) | 'Sequence and comparative genomic analysis of lactococcal bacteriophages jj50, 712 and P008: evolutionary insights into the 936 phage species' Mahony, Jennifer and Deveau, H\'el\`ene and Mc Grath, Stephen and Ventura, Marco and Canchaya, Carlos and Moineau, Sylvain and Fitzgerald, Gerald F and Van Sinderen, Douwe (2006) 'Sequence and comparative genomic analysis of lactococcal bacteriophages jj50, 712 and P008: evolutionary insights into the 936 phage species'. Fems Microbiology Letters, 261 (2):253-261 [Details] | |
| (2006) | 'Diversity of the genus Lactobacillus revealed by comparative genomics of five species' Canchaya C, Claesson MJ, Fitzgerald GF, van Sinderen D, O'Toole PW (2006) 'Diversity of the genus Lactobacillus revealed by comparative genomics of five species'. Microbiology, [Details] | |
| (2006) | 'Anatomy of a lactococcal phage tail' Mc Grath, Stephen and Neve, Horst and Seegers, Jos FML and Eijlander, Robyn and Vegge, Christina S and Br\ondsted, Lone and Heller, Knut J and Fitzgerald, Gerald F and Vogensen, Finn K and van Sinderen, Douwe (2006) 'Anatomy of a lactococcal phage tail'. Journal of Bacteriology, 188 (11):3972-3982 [Details] | |
| (2006) | 'How high G+C Gram-positive bacteria and in particular bifidobacteria cope with heat stress: protein players and regulators' Ventura, Marco and Canchaya, Carlos and Zhang, Ziding and Bernini, Valentina and Fitzgerald, Gerald F. and van Sinderen, Douwe; (2006) 'How high G+C Gram-positive bacteria and in particular bifidobacteria cope with heat stress: protein players and regulators'. FEMS MICROBIOLOGY REVIEWS, 30 (5):734-759 [DOI] [Details] | |
| (2006) | 'Analysis of bifidobacterial evolution using a multilocus approach' Ventura, Marco and Canchaya, Carlos and Del Casale, Antonio and Dellaglio, Franco and Neviani, Erasmo and Fitzgerald, Gerald F and Van Sinderen, Douwe (2006) 'Analysis of bifidobacterial evolution using a multilocus approach'. International Journal of Systematic and Evolutionary Microbiology, 56 (12):2783-2792 [Details] | |
| (2006) | 'Characterization of the lytic--lysogenic switch of the lactococcal bacteriophage Tuc2009' Kenny, John G and Leach, Stephen and de la Hoz, Ana B and Venema, Gerard and Kok, Jan and Fitzgerald, Gerald F and Nauta, Arjen and Alonso, Juan C and van Sinderen, Douwe (2006) 'Characterization of the lytic--lysogenic switch of the lactococcal bacteriophage Tuc2009'. Virology Journal, 347 (2):434-446 [Details] | |
| (2006) | 'Sequence analysis of the lactococcal plasmid pNP40: a mobile replicon for coping with environmental hazards' O'Driscoll, Jonathan and Glynn, Frances and Fitzgerald, Gerald F and van Sinderen, Douwe (2006) 'Sequence analysis of the lactococcal plasmid pNP40: a mobile replicon for coping with environmental hazards'. Journal of Bacteriology, 188 (18):6629-6639 [Details] | |
| (2006) | 'How high G+ C Gram-positive bacteria and in particular bifidobacteria cope with heat stress: protein players and regulators' Ventura, Marco and Canchaya, Carlos and Zhang, Ziding and Bernini, Valentina and Fitzgerald, Gerald F and Van Sinderen, Douwe (2006) 'How high G+ C Gram-positive bacteria and in particular bifidobacteria cope with heat stress: protein players and regulators'. Fems Microbiology Letters, 30 (5):734-759 [Details] | |
| (2006) | 'Combination of multiplex PCR electrophoresis for monitoring and PCR-denaturing gradient gel common sourdough-associated Lactobacillus species' Settanni, L,Valmorri, S,van Sinderen, D,Suzzi, G,Paparella, A,Corsetti, A; (2006) 'Combination of multiplex PCR electrophoresis for monitoring and PCR-denaturing gradient gel common sourdough-associated Lactobacillus species'. Applied and Environmental Microbiology, 72 :3793-3796 [Details] | |
| (2006) | 'Analysis of bifidobacterial evolution using a multilocus approach' Ventura, M,Canchaya, C,Del Casale, A,Dellaglio, F,Neviani, E,Fitzgerald, GF,van Sinderen, D; (2006) 'Analysis of bifidobacterial evolution using a multilocus approach'. International Journal of Systematic and Evolutionary Microbiology, 56 :2783-2792 [DOI] [Details] | |
| (2006) | 'A genetic dissection of the LlaJl restriction cassette reveals insights on a novel bacteriophage resistance system' O'Driscoll, J,Heiter, DF,Wilson, GG,Fitzgerald, GF,Roberts, R,van Sinderen, D; (2006) 'A genetic dissection of the LlaJl restriction cassette reveals insights on a novel bacteriophage resistance system'. BMC Microbiology, 6 [DOI] [CORA Link] [Details] | |
| (2006) | 'The riboflavin transporter RibU in Lactococcus lactis: Molecular characterization of gene expression and the transport mechanism' Burgess, CM,Slotboom, DJ,Geertsma, ER,Duurkens, RH,Poolman, B,van Sinderen, D; (2006) 'The riboflavin transporter RibU in Lactococcus lactis: Molecular characterization of gene expression and the transport mechanism'. Journal of Bacteriology, 188 :2752-2760 [DOI] [Details] | |
| (2006) | 'Comparative and functional analysis of sortase-dependent proteins in the predicted secretome of Lactobacillus salivarius UCC118' van Pijkeren, Jan-Peter and Canchaya, Carlos and Ryan, Kieran A and Li, Yin and Claesson, Marcus J and Sheil, Barbara and Steidler, Lothar and O'Mahony, Liam and Fitzgerald, Gerald F and van Sinderen, Douwe and others (2006) 'Comparative and functional analysis of sortase-dependent proteins in the predicted secretome of Lactobacillus salivarius UCC118'. Applied and Environmental Microbiology, 72 (6):4143-4153 [Details] | |
| (2006) | 'Multireplicon genome architecture of Lactobacillus salivarius' Higgins, Des and Leahy, Sinead and Cerde\~no-T\'arraga, Ana M and Parkhill, Julian and van Pijkeren, Jan Peter and Fitzgerald, Gerald F and Shanahan, Fergus and van Sinderen, Douwe and Claesson, Marcus J and O'Toole, Paul W and others (2006) 'Multireplicon genome architecture of Lactobacillus salivarius'. Proceedings of The National Academy of Sciences of The United States of America, (17):6718-6723 [Details] | |
| (2005) | 'Genetic and transcriptional organization of the clpC locus in Bifidobacterium breve UCC 2003' Ventura M, Fitzgerald GF, van Sinderen D; (2005) 'Genetic and transcriptional organization of the clpC locus in Bifidobacterium breve UCC 2003'. Applied and Environmental Microbiology, 71 (10):6282-6291 [DOI] [Details] | |
| (2005) | 'Fermented functional foods based on probiotics and their biogenic metabolites' Stanton C, Ross RP, Fitzgerald GF, Van Sinderen D; (2005) 'Fermented functional foods based on probiotics and their biogenic metabolites'. Current Opinion In Biotechnology, 16 (2):198-203 [DOI] [Details] | |
| (2005) | 'A dichotomous epigenetic mechanism governs expression of the LlaJI restriction/modification system' O'Driscoll, J,Fitzgerald, GF,van Sinderen, D; (2005) 'A dichotomous epigenetic mechanism governs expression of the LlaJI restriction/modification system'. Molecular Microbiology, 57 :1532-1544 [DOI] [Details] | |
| (2005) | 'Getting better with bifidobacteria' Leahy, SC and Higgins, DG and Fitzgerald, GF and van Sinderen, D; (2005) 'Getting better with bifidobacteria'. JOURNAL OF APPLIED MICROBIOLOGY, 98 (6):1303-1315 [DOI] [Details] | |
| (2005) | 'Transcriptional regulation and characterization of a novel beta-fructofuranosidase-encoding gene from Bifidobacterium breve UCC2003' Ryan, SM,Fitzgerald, GF,van Sinderen, D (2005) 'Transcriptional regulation and characterization of a novel beta-fructofuranosidase-encoding gene from Bifidobacterium breve UCC2003'. Applied and Environmental Microbiology, 71 :3475-3482 [DOI] [Details] | |
| (2005) | 'Probing direct interactions between CodY and the oppD promoter of Lactococcus lactis' den Hengst, CD,Curley, P,Larsen, R,Buist, G,Nauta, A,van Sinderen, D,Kuipers, OP,Kok, J; (2005) 'Probing direct interactions between CodY and the oppD promoter of Lactococcus lactis'. Journal of Bacteriology, 187 :512-521 [DOI] [Details] | |
| (2005) | 'Rapid differentiation and in situ detection of 16 sourdough Lactobacillus species by multiplex PCR' Settanni, L,van Sinderen, D,Rossi, J,Corsetti, A; (2005) 'Rapid differentiation and in situ detection of 16 sourdough Lactobacillus species by multiplex PCR'. Applied and Environmental Microbiology, 71 :3049-3059 [DOI] [Details] | |
| (2005) | 'Genetic characterization of the Bifidobacterium breve UCC 2003 hrcA locus' Ventura, M,Canchaya, C,Bernini, V,Del Casale, A,Dellaglio, F,Neviani, E,Fitzgerald, GF,van Sinderen, D; (2005) 'Genetic characterization of the Bifidobacterium breve UCC 2003 hrcA locus'. Applied and Environmental Microbiology, 71 :8998-9007 [DOI] [Details] | |
| (2005) | 'Lactobacillus rossii sp nov., isolated from wheat sourdough' Corsetti, A,Settanni, L,van Sinderen, D,Felis, GE,Dellaglio, F,Gobbetti, M; (2005) 'Lactobacillus rossii sp nov., isolated from wheat sourdough'. International Journal of Systematic and Evolutionary Microbiology, 55 :35-40 [DOI] [Details] | |
| (2005) | 'The ClgR protein regulates transcription of the clpP operon in Bifidobacterium breve UCC 2003' Ventura, M,Zhang, ZD,Cronin, M,Canchaya, C,Kenny, JG,Fitzgerald, GF,van Sinderen, D; (2005) 'The ClgR protein regulates transcription of the clpP operon in Bifidobacterium breve UCC 2003'. Journal of Bacteriology, 187 :8411-8426 [DOI] [Details] | |
| (2005) | 'Lactococcus lactis is capable of improving the riboflavin status in deficient rats' LeBlanc, JG,Burgess, C,Sesma, F,de Giori, GS,van Sinderen, D; (2005) 'Lactococcus lactis is capable of improving the riboflavin status in deficient rats'. British Journal of Nutrition, 94 :262-267 [DOI] [CORA Link] [Details] | |
| (2005) | 'BlastXtrac - a new way of exploring translated searches' Claesson, MJ,van Sinderen, D; (2005) 'BlastXtrac - a new way of exploring translated searches'. Bioinformatics (Oxford, England), 21 :3667-3668 [DOI] [Details] | |
| (2005) | 'The clpB gene of Bifidobacterium breve UCC 2003: transcriptional analysis and first insights into stress induction' Ventura, M,Kenny, JG,Zhang, ZD,Fitzgerald, GF,van Sinderen, D; (2005) 'The clpB gene of Bifidobacterium breve UCC 2003: transcriptional analysis and first insights into stress induction'. Microbiology-SGM, 151 :2861-2872 [DOI] [Details] | |
| (2005) | 'Macrolide resistance mediated by a Bifidobacterium breve membrane protein' Margolles, A,Moreno, JA,van Sinderen, D,Reyes-Gavilan, CGD; (2005) 'Macrolide resistance mediated by a Bifidobacterium breve membrane protein'. Antimicrobial Agents and Chemotherapy, 49 :4379-4381 [DOI] [Details] | |
| (2005) | 'In situ activity of a bacteriocin-producing Lactococcus lactis strain. Influence on the interactions between lactic acid bacteria during sourdough fermentation' Settanni, L,Massitti, O,Van Sinderen, D,Corsetti, A; (2005) 'In situ activity of a bacteriocin-producing Lactococcus lactis strain. Influence on the interactions between lactic acid bacteria during sourdough fermentation'. Journal of Applied Microbiology, 99 :670-681 [DOI] [Details] | |
| (2005) | 'Structural characterization and assembly of the distal tail structure of the temperate lactococcal bacteriophage TP901-1' Vegge, CS,Brondsted, L,Neve, H,Mc Grath, S,van Sinderen, D,Vogensen, FK; (2005) 'Structural characterization and assembly of the distal tail structure of the temperate lactococcal bacteriophage TP901-1'. Journal of Bacteriology, 187 :4187-4197 [DOI] [Details] | |
| (2005) | 'Prophage-like elements in bifidobacteria: Insights from genomics, transcription, integration, distribution, and phylogenetic analysis' Ventura, M,Lee, JH,Canchaya, C,Zink, R,Leahy, S,Moreno-Munoz, JA,O'Connell-Motherway, M,Higgins, D,Fitzgerald, GF,O'Sullivan, DJ,van Sinderen, D (2005) 'Prophage-like elements in bifidobacteria: Insights from genomics, transcription, integration, distribution, and phylogenetic analysis'. Applied and Environmental Microbiology, 71 :8692-8705 [DOI] [Details] | |
| (2005) | 'The clpB gene of Bifidobacterium breve UCC 2003: transcriptional analysis and first insights into stress induction' Ventura, Marco and Kenny, John G and Zhang, Ziding and Fitzgerald, Gerald F and van Sinderen, Douwe (2005) 'The clpB gene of Bifidobacterium breve UCC 2003: transcriptional analysis and first insights into stress induction'. BMC Microbiology, 151 (9):2861-2872 [Details] | |
| (2005) | 'Ingestion of milk fermented by genetically modified Lactococcus lactis improves the riboflavin status of deficient rats' LeBlanc, JG,Burgess, C,Sesma, F,de Giori, GS,van Sinderen, D (2005) 'Ingestion of milk fermented by genetically modified Lactococcus lactis improves the riboflavin status of deficient rats'. Journal of Dairy Science, 88 :3435-3442 [Details] | |
| (2005) | 'A dichotomous epigenetic mechanism governs expression of the LlaJI restriction/modification system' O'Driscoll, Jonathan and Fitzgerald, Gerald F and Van Sinderen, Douwe (2005) 'A dichotomous epigenetic mechanism governs expression of the LlaJI restriction/modification system'. Journal of Molecular Microbiology Biotechniques, 57 (6):1532-1544 [Details] | |
| (2005) | 'Transcriptional regulation and characterization of a novel $\beta$-fructofuranosidase-encoding gene from Bifidobacterium breve UCC2003' Ryan, Sin\'ead M and Fitzgerald, Gerald F and van Sinderen, Douwe (2005) 'Transcriptional regulation and characterization of a novel $\beta$-fructofuranosidase-encoding gene from Bifidobacterium breve UCC2003'. Applied and Environmental Microbiology, 71 (7):3475-3482 [Details] | |
| (2005) | 'Genetic characterization of the Bifidobacterium breve UCC 2003 hrcA locus' Ventura, Marco and Canchaya, Carlos and Bernini, Valentina and Del Casale, Antonio and Dellaglio, Franco and Neviani, Erasmo and Fitzgerald, Gerald F and van Sinderen, Douwe (2005) 'Genetic characterization of the Bifidobacterium breve UCC 2003 hrcA locus'. Applied and Environmental Microbiology, 71 (12):8998-9007 [Details] | |
| (2005) | 'Gene structure and transcriptional organization of the dnaK operon of Bifidobacterium breve UCC 2003 and application of the operon in bifidobacterial tracing' Ventura, Marco and Zink, Ralf and Fitzgerald, Gerald F and van Sinderen, Douwe (2005) 'Gene structure and transcriptional organization of the dnaK operon of Bifidobacterium breve UCC 2003 and application of the operon in bifidobacterial tracing'. Applied and Environmental Microbiology, 71 (1):487-500 [Details] | |
| (2005) | 'The ClgR protein regulates transcription of the clpP operon in Bifidobacterium breve UCC 2003' Ventura, Marco and Zhang, Ziding and Cronin, Michelle and Canchaya, Carlos and Kenny, John G and Fitzgerald, Gerald F and van Sinderen, Douwe (2005) 'The ClgR protein regulates transcription of the clpP operon in Bifidobacterium breve UCC 2003'. Journal of Bacteriology, 187 (24):8411-8426 [Details] | |
| (2005) | 'Genetic and transcriptional organization of the clpC locus in Bifidobacterium breve UCC 2003' Ventura, Marco and Fitzgerald, Gerald F and van Sinderen, Douwe (2005) 'Genetic and transcriptional organization of the clpC locus in Bifidobacterium breve UCC 2003'. Applied and Environmental Microbiology, 71 (10):6282-6291 [Details] | |
| (2004) | 'Characterization of the groEL and groES loci in Bifidobacterium breve UCC 2003: genetic, transcriptional, and phylogenetic analyses' Ventura, Marco and Canchaya, Carlos and Zink, Ralf and Fitzgerald, Gerald F and Van Sinderen, Douwe (2004) 'Characterization of the groEL and groES loci in Bifidobacterium breve UCC 2003: genetic, transcriptional, and phylogenetic analyses'. Applied and Environmental Microbiology, 70 (10):6197-6209 [Details] | |
| (2004) | 'Application of biological acidification to improve the quality and processability of wort produced from 50% raw barley' Lowe, DP,Ulmer, HM,van Sinderen, D,Arendt, EK; (2004) 'Application of biological acidification to improve the quality and processability of wort produced from 50% raw barley'. Journal of The Institute of Brewing, 110 :133-140 [Details] | |
| (2004) | 'Bacteriophage Tuc2009 encodes a tail-associated cell wall-degrading activity' Kenny, JG,McGrath, S,Fitzgerald, GF,van Sinderen, D; (2004) 'Bacteriophage Tuc2009 encodes a tail-associated cell wall-degrading activity'. Journal of Bacteriology, 186 :3480-3491 [DOI] [Details] | |
| (2004) | 'Riboflavin production in Lactococcus lactis: Potential for in situ production of vitamin-enriched foods' Burgess, C,O'Connell-Motherway, M,Sybesma, W,Hugenholtz, J,van Sinderen, D; (2004) 'Riboflavin production in Lactococcus lactis: Potential for in situ production of vitamin-enriched foods'. Applied and Environmental Microbiology, 70 :5769-5777 [DOI] [Details] | |
| (2004) | 'Lactococcal plasmid pNP40 encodes a novel, temperature-sensitive restriction-modification system' O'Driscoll, J,Glynn, F,Cahalane, O,O'Connell-Motherway, M,Fitzgerald, GF,van Sinderen, D; (2004) 'Lactococcal plasmid pNP40 encodes a novel, temperature-sensitive restriction-modification system'. Applied and Environmental Microbiology, 70 :5546-5556 [DOI] [Details] | |
| (2004) | 'Investigating the antimicrobial efficacy of a lactococcal bacteriocin for the development of microbiologically stable beer' Vaughan, A,Rouse, S,van Sinderen, D; (2004) 'Investigating the antimicrobial efficacy of a lactococcal bacteriocin for the development of microbiologically stable beer'. Journal of The Institute of Brewing, 110 :181-188 [Details] | |
| (2004) | 'Gene structure and transcriptional organization of the dnaK operon of Bifidobacterium breve and its application in bifidobacterial tracing' Ventura, M., Zink, R., Fitzgerald, GF., van Sinderen, Douwe.; (2004) 'Gene structure and transcriptional organization of the dnaK operon of Bifidobacterium breve and its application in bifidobacterial tracing'. Applied Environmental Microbiology, accepted for publication (*):*-* [Details] | |
| (2004) | 'Transcriptional analysis of bacteriocin production by malt isolate lactobaccillus sakei 5' Vaughan, A., O'Mahony, J., Eijsink, V., O'Connell-Motherway, M., van Sinderen, D.; (2004) 'Transcriptional analysis of bacteriocin production by malt isolate lactobaccillus sakei 5'. Fems Microbiology Letters, 235 (*):377-384 [Details] | |
| (2004) | 'In vitro inhibition of Eimeria tenella invasion by indigenous chicken Lactobacillus species' Tierney, J,Gowing, H,Van Sinderen, D,Flynn, S,Stanley, L,McHardy, N,Hallahan, S,Mulcahy, G; (2004) 'In vitro inhibition of Eimeria tenella invasion by indigenous chicken Lactobacillus species'. Veterinary Parasitology, 122 :171-182 [DOI] [Details] | |
| (2004) | 'Characterisation of bacteriocin like inhibitory substances (BLIS) from sourdough lactic acid bacteria and evaluation of their in vitro and in situ activity' Sybesma, W., Burgess, C., Starrenburg, M., Van Sinderen, D.; (2004) 'Characterisation of bacteriocin like inhibitory substances (BLIS) from sourdough lactic acid bacteria and evaluation of their in vitro and in situ activity'. accepted for publishing (*):*-* [Details] | |
| (2004) | 'The impact of phage genomics' McGrath, S., Fitzgerald, GF., van Sinderen, D.; (2004) 'The impact of phage genomics'. Current Opinion Cell Biology, 15 (*):94-99 [Details] | |
| (2004) | 'Characterization of bacteriocin-like inhibitory substances (BLIS) from sourdough lactic acid bacteria and evaluation of their in vitro and in situ activity' Corsetti, A,Settanni, L,Van Sinderen, D; (2004) 'Characterization of bacteriocin-like inhibitory substances (BLIS) from sourdough lactic acid bacteria and evaluation of their in vitro and in situ activity'. Journal of Applied Microbiology, 96 :521-534 [DOI] [Details] | |
| (2004) | 'Multivitamin production in lactococcus lactis using metabolic engineering' Sybesma, W., Burgess, C., Starrenburg, M., Van Sinderen, D., Hugenholtz, J.; (2004) 'Multivitamin production in lactococcus lactis using metabolic engineering'. 6 (*):109-115 [Details] | |
| (2004) | 'Characterization of the GroEL and GroES loci in Bifidobacterium breve UCC2003: genetic, transcriptional and phylogenetic analysis' Ventura, M., Canchaya, C., Zink, R., Fitzgerald, G., van Sinderen, D.; (2004) 'Characterization of the GroEL and GroES loci in Bifidobacterium breve UCC2003: genetic, transcriptional and phylogenetic analysis'. Applied Environmental Microbiology, * (70):6197-6209 [Details] | |
| (2004) | 'Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny' Ventura, Marco and Canchaya, Carlos and van Sinderen, Douwe and Fitzgerald, Gerald F and Zink, Ralf (2004) 'Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny'. Applied and Environmental Microbiology, 70 (5):3110-3121 [Details] | |
| (2004) | 'Insights into the taxonomy, genetics and physiology of bifidobacteria' Ventura, Marco and van Sinderen, Douwe and Fitzgerald, Gerald F and Zink, Ralf (2004) 'Insights into the taxonomy, genetics and physiology of bifidobacteria'. Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology, 86 (3):205-223 [Details] | |
| (2004) | 'Multivitamin production in Lactococcus lactis using metabolic engineering' Sybesma, W,Burgess, C,Starrenburg, M,van Sinderen, D,Hugenholtz, J (2004) 'Multivitamin production in Lactococcus lactis using metabolic engineering'. Metabolic Engineering, 6 :109-115 [DOI] [Details] | |
| (2004) | 'Molecular and transcriptional analysis of the temperate lactococcal bacteriophage Tuc2009' Seegers, Jos FML and Mc Grath, Stephen and O'Connell-Motherway, Mary and Arendt, Elke K and van de Guchte, Maarten and Creaven, Martina and Fitzgerald, Gerald F and van Sinderen, Douwe (2004) 'Molecular and transcriptional analysis of the temperate lactococcal bacteriophage Tuc2009'. Virology Journal, 329 (1):40-52 [Details] | |
| (2004) | 'The impact of bacteriophage genomics' McGrath S, Fitzgerald GF, van Sinderen D; (2004) 'The impact of bacteriophage genomics'. Current Opinion In Biotechnology, 15 (2):94-99 [DOI] [Details] | |
| (2004) | 'Molecular and transcriptional analysis of the temperate lactococcal bacteriophage Tuc2009' Seegers JF, Mc Grath S, O'Connell-Motherway M, Arendt EK, van de Guchte M, Creaven M, Fitzgerald GF, van Sinderen D; (2004) 'Molecular and transcriptional analysis of the temperate lactococcal bacteriophage Tuc2009'. Virology, 329 (1):40-52 [DOI] [Details] | |
| (2004) | 'Insights into the taxonomy, genetics and physiology of bifidobacteria' Ventura M, van Sinderen D, Fitzgerald GF, Zink R; (2004) 'Insights into the taxonomy, genetics and physiology of bifidobacteria'. Antonie Van Leeuwenhoek, 86 (3):205-223 [DOI] [Details] | |
| (2004) | 'The lactococcal plasmid pNP40 encodes a novel, temperature sensitive restriction/modification system' O'Driscoll, J., Glynn, F., Cahalane, O., O'Connell-Motherway, M., van Sinderen, D.; (2004) 'The lactococcal plasmid pNP40 encodes a novel, temperature sensitive restriction/modification system'. Applied Environmental Microbiology, 70 (*):5546-5556 [Details] | |
| (2004) | 'Lactococcal plasmid pNP40 encodes a novel, temperature-sensitive restriction-modification system' O'driscoll, Jonathan and Glynn, Frances and Cahalane, Oonagh and O'Connell-Motherway, Mary and Fitzgerald, Gerald F and Van Sinderen, Douwe (2004) 'Lactococcal plasmid pNP40 encodes a novel, temperature-sensitive restriction-modification system'. Applied and Environmental Microbiology, 70 (9):5546-5556 [Details] | |
| (2004) | 'Bacteriophage Tuc2009 encodes a tail-associated cell wall-degrading activity' Kenny, John G and McGrath, Stephen and Fitzgerald, Gerald F and van Sinderen, Douwe (2004) 'Bacteriophage Tuc2009 encodes a tail-associated cell wall-degrading activity'. Journal of Bacteriology, 186 (11):3480-3491 [Details] | |
| (2003) | 'Isolation and characterisation of a novel bacteriocin produced by Bacillus thuringiensis strain B439' Ahern, M,Verschueren, S,van Sinderen, D; (2003) 'Isolation and characterisation of a novel bacteriocin produced by Bacillus thuringiensis strain B439'. Fems Microbiology Letters, 220 :127-131 [DOI] [Details] | |
| (2003) | 'Functional characterization of a composite bacteriocin locus from malt isolate Lactobacillus sakei 5' Vaughan, A,Eijsink, VGH,van Sinderen, D; (2003) 'Functional characterization of a composite bacteriocin locus from malt isolate Lactobacillus sakei 5'. Applied and Environmental Microbiology, 69 :7194-7203 [DOI] [Details] | |
| (2003) | 'Investigation of protein export in Bifidobacterium breve UCC2003' MacConaill, LE,Fitzgerald, GF,van Sinderen, D; (2003) 'Investigation of protein export in Bifidobacterium breve UCC2003'. Applied and Environmental Microbiology, 69 :6994-7001 [DOI] [Details] | |
| (2003) | 'The bacillus subtilus transistion state regulator AbrB binds to the -35 promoter region of comK' Hamoen, L., Kausche, D., Marahiel, M., Van Sinderen, D., Venema, G., Serror, P.; (2003) 'The bacillus subtilus transistion state regulator AbrB binds to the -35 promoter region of comK'. Fems Microbiology Letters, 218 (*):299-304 [Details] | |
| (2003) | 'Investigation of protein export in Bifidobacterium breve UCC2003' MacConaill, Laura E and Fitzgerald, Gerald F and van Sinderen, Douwe (2003) 'Investigation of protein export in Bifidobacterium breve UCC2003'. Applied and Environmental Microbiology, 69 (12):6994-7001 [Details] | |
| (2003) | 'Identification of tow component regulatory systems in Bifidobacterium infantis by functional complementation and degerate PCR approaches' MacConaill, L., Butler, D., O'Connell-Motherway, M., Fitzgerald, G., Van Sinderen, D.; (2003) 'Identification of tow component regulatory systems in Bifidobacterium infantis by functional complementation and degerate PCR approaches'. Applied Environmental Microbiology, 69 (*):6994-7001 [Details] | |
| (2003) | 'Purification and characterisation of a lactococcal aminoacylase' Curley, P,van der Does, C,Driessen, AJM,Kok, J,van Sinderen, D; (2003) 'Purification and characterisation of a lactococcal aminoacylase'. Archives of Microbiology, 179 :402-408 [DOI] [Details] | |
| (2003) | 'Identification of two-component regulatory systems in Bifidobacterium infantis by functional complementation and degenerate PCR approaches' MacConaill, Laura E and Butler, Derek and O'Connell-Motherway, Mary and Fitzgerald, Gerald F and van Sinderen, Douwe (2003) 'Identification of two-component regulatory systems in Bifidobacterium infantis by functional complementation and degenerate PCR approaches'. Applied and Environmental Microbiology, 69 (7):4219-4226 [Details] | |
| (2002) | 'Antimicrobial-producing lactic acid bacteria isolated from raw barley and sorghum' Hartnett, DJ,Vaughan, A,van Sinderen, D; (2002) 'Antimicrobial-producing lactic acid bacteria isolated from raw barley and sorghum'. Journal of The Institute of Brewing, 108 :169-177 [Details] | |
| (2002) | 'Identification of a phosphofructokinase-encoding gene from Streptococcus thermophilus CNRZ1205 - a novel link between carbon metabolism and gene regulation?' Crispie, F,Anba, J,Renault, P,Ehrlich, D,Fitzgerald, G,van Sinderen, D; (2002) 'Identification of a phosphofructokinase-encoding gene from Streptococcus thermophilus CNRZ1205 - a novel link between carbon metabolism and gene regulation?'. Genomics, 268 :500-509 [DOI] [Details] | |
| (2002) | 'Identification and characterization of phage-resistance genes in temperate lactococcal bacteriophages' McGrath, S,Fitzgerald, GF,van Sinderen, D; (2002) 'Identification and characterization of phage-resistance genes in temperate lactococcal bacteriophages'. Molecular Microbiology, 43 :509-520 [Details] | |
| (2002) | 'Bacteriophage-derived genetic tools for use in lactic acid bacteria' McGrath, S and van Sinderen, D and Fitzgerald, GF; (2002) 'Bacteriophage-derived genetic tools for use in lactic acid bacteria'. INTERNATIONAL DAIRY JOURNAL, 12 (1):3-15 [Details] | |
| (2002) | 'Molecular characterization of cadmium resistance in Streptococcus thermophilus strain 4134: An example of lateral gene transfer' Schirawski, J,Hagens, W,Fitzgerald, GF,van Sinderen, D; (2002) 'Molecular characterization of cadmium resistance in Streptococcus thermophilus strain 4134: An example of lateral gene transfer'. Applied and Environmental Microbiology, 68 :5508-5516 [DOI] [Details] | |
| (2002) | 'Characterization of the genetic locus responsible for the production of ABP-118, a novel bacteriocin produced by the probiotic bacterium Lactobacillus salivarius subsp. salivarius UCC118' Flynn S, van Sinderen D, Thornton GM, Holo H, Nes IF, Collins JK; (2002) 'Characterization of the genetic locus responsible for the production of ABP-118, a novel bacteriocin produced by the probiotic bacterium Lactobacillus salivarius subsp. salivarius UCC118'. Microbiology, 148 (Pt 4):973-984 [Details] | |
| (2002) | 'Natural and engineered phage resistance systems in the genus Lactococcus' McGrath, S. van Sinderen, D. and Fitzgerald, G.F.; (2002) 'Natural and engineered phage resistance systems in the genus Lactococcus'. Journal Dairy Science, * (In press):*-* [Details] | |
| (2002) | 'Geneticorganisations of adaptive response in Bifodobacterium' McConnaill,L., van Sinderen,D., Fitzgerald,G.,; (2002) 'Geneticorganisations of adaptive response in Bifodobacterium'. * (*):*-* [Details] | |
| (2002) | 'The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21 like siphoviridae in lactic acid bacteria' Proux, C., van Sinderen, D., Suarez, J., Garcia, P., Ladero, V., Fitzgerald, G., Desiere, F., Brussow, H; (2002) 'The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21 like siphoviridae in lactic acid bacteria'. Journal of Bacteriology, * (184):6026-6036 [Details] | |
| (2002) | 'Comparative genomics of bacteriophage infecting Lactic Acid Bacteria. In: The Lactic Acid Bacteria, Volume III, The genetics of LAB (edited by Warner, P. and Wood, B.J.B.) Aspen Maryland, USA' Stanley, E., Fitzgerald, G.F. and D. van Sinderen.; (2002) 'Comparative genomics of bacteriophage infecting Lactic Acid Bacteria. In: The Lactic Acid Bacteria, Volume III, The genetics of LAB (edited by Warner, P. and Wood, B.J.B.) Aspen Maryland, USA'. * (In Press):*-* [Details] | |
| (2002) | 'Defences against viral intruders: Phage resistance mechanisms of lactic acid bacteria' Schirawski, J., McGrath, S., Fitzgerald, GF., van Sinderen, d; (2002) 'Defences against viral intruders: Phage resistance mechanisms of lactic acid bacteria'. Recent Research development Microbiology, [Details] | |
| (2002) | 'Identification of a bacterial antigen recognised by serum from patients with Crohns disease' Feeney, M.,O'Mahony, L.,Kelly, P.,VanSinderen, D.,Kiely, B.,Shanahan, F.,Collins, J. K. (2002) 'Identification of a bacterial antigen recognised by serum from patients with Crohns disease'. Gastroenterology, 122 (44) [Details] | |
| (2002) | 'Identification of a phosphofructokinase-encoding gene from Streptococcus thermophilus CNRZ1205--a novel link between carbon metabolism and gene regulation?' Crispie, F and Anba, J and Renault, P and Ehrlich, D and Fitzgerald, G and van Sinderen, D (2002) 'Identification of a phosphofructokinase-encoding gene from Streptococcus thermophilus CNRZ1205--a novel link between carbon metabolism and gene regulation?'. Molecular and General Genomics, 268 (4):500-509 [Details] | |
| (2002) | 'Molecular characterization of cadmium resistance in Streptococcus thermophilus strain 4134: an example of lateral gene transfer' Schirawski, Jan and Hagens, Werner and Fitzgerald, Gerald F and van Sinderen, Douwe (2002) 'Molecular characterization of cadmium resistance in Streptococcus thermophilus strain 4134: an example of lateral gene transfer'. Applied and Environmental Microbiology, 68 (11):5508-5516 [Details] | |
| (2002) | 'The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria' Proux, Caroline and van Sinderen, Douwe and Suarez, Juan and Garcia, Pilar and Ladero, Victor and Fitzgerald, Gerald F and Desiere, Frank and Br\"ussow, Harald (2002) 'The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria'. Journal of Bacteriology, 184 (21):6026-6036 [Details] | |
| (2002) | 'Bacteriophage-derived genetic tools for use in lactic acid bacteria' Grath, S Mc and Van Sinderen, D and Fitzgerald, GF (2002) 'Bacteriophage-derived genetic tools for use in lactic acid bacteria'. International Dairy Journal, 12 (1):3-15 [Details] | |
| (2002) | 'Identification and characterisation of phage-resistant genes in temperate lactococcal bacteriophages' McGrath, S. van Sinderen; (2002) 'Identification and characterisation of phage-resistant genes in temperate lactococcal bacteriophages'. Molecular Microbiology, * (43):509-520 [Details] | |
| (2001) | 'Insertional mutagenesis of an industrial strain of Streptococcus thermophilus' Labarre, C,Schirawski, J,van der Zwet, A,Fitzgerald, GF,van Sinderen, D; (2001) 'Insertional mutagenesis of an industrial strain of Streptococcus thermophilus'. Fems Microbiology Letters, 200 :85-90 [Details] | |
| (2001) | 'Improvement and optimization of two engineered phage resistance mechanisms in Lactococcus lactis' McGrath, Stephen and Fitzgerald, Gerald F and Van Sinderen, Douwe (2001) 'Improvement and optimization of two engineered phage resistance mechanisms in Lactococcus lactis'. Applied and Environmental Microbiology, 67 (2):608-616 [Details] | |
| (2001) | 'Improvement and optimisation of two engineered phage resistance mechanisms in Lactococcus lactis' McGrath, S., Fitzgerald, G.F. and van Sinderen, D.; (2001) 'Improvement and optimisation of two engineered phage resistance mechanisms in Lactococcus lactis'. Applied Environmental Microbiology, * (67):608-616 [Details] | |
| (2001) | 'Electrotransformation of Bifidobacteria and selection of a strain for molecular characterisation' O'Mahony, C., Fitzgerald, G.F., and van Sinderen, D.; (2001) 'Electrotransformation of Bifidobacteria and selection of a strain for molecular characterisation'. Irish Journal of Agricultural and Food Research, * (*):40-124 [Details] | |
| (2001) | 'Comparative genomics reveals close genetic relationships between phages from dairy bacteria and pathogenic streptococci: Evolutionary implications for prophage-host interactions' Desiere, F,McShan, WM,van Sinderen, D,Ferretti, JJ,Brussow, H; (2001) 'Comparative genomics reveals close genetic relationships between phages from dairy bacteria and pathogenic streptococci: Evolutionary implications for prophage-host interactions'. Virology, 288 :325-341 [Details] | |
| (2001) | 'Impact of genomics on Dairy cultures and pathogens' Ross, R. P., Coffey, A., Fitzgerald, G.F., van Sinderen, D., and Stanton, C.; (2001) 'Impact of genomics on Dairy cultures and pathogens'. * (11):32-37 [Details] | |
| (2001) | 'An analysis of bacteriocins produced by lactic acid bacteria isolated from malted barley' Vaughan, A,Eijsink, VGH,O'Sullivan, TF,O'Hanlon, K,van Sinderen, D; (2001) 'An analysis of bacteriocins produced by lactic acid bacteria isolated from malted barley'. Journal of Applied Microbiology, 91 :131-138 [Details] | |
| (2000) | 'The Streptococcus thermophilus autolytic phenotype results from a leaky prophage' Husson-Kao, C,Mengaud, J,Cesselin, B,van Sinderen, D,Benbadis, L,Chapot-Chartier, MP; (2000) 'The Streptococcus thermophilus autolytic phenotype results from a leaky prophage'. Applied and Environmental Microbiology, 66 :558-565 [Details] | |
| (2000) | 'Identification and characterisation of a gene encoding aminoacylase activity from Lactococcus lactis MG1363' Curley, P,van Sinderen, D; (2000) 'Identification and characterisation of a gene encoding aminoacylase activity from Lactococcus lactis MG1363'. Fems Microbiology Letters, 183 :177-182 [Details] | |
| (2000) | 'Characterisation of antimicrobial producing lactic acid bacteria from malted barley' O'Mahony, A and O'Sullivan, T and Walsh, Y and Vaughan, A and Maher, M and Fitzgerald, GF and van Sinderen, D; (2000) 'Characterisation of antimicrobial producing lactic acid bacteria from malted barley'. JOURNAL OF THE INSTITUTE OF BREWING, 106 (6):403-410 [Details] | |
| (2000) | 'Six putative two-component regulatory systems isolated from lactococcus lactis susp. cremoris MG1363' O'Connell-Motherway M, van Sinderen D., Morel-Deville, F., Fitzgerald, G.F., Ehrlich, S.D., Morel, P.; (2000) 'Six putative two-component regulatory systems isolated from lactococcus lactis susp. cremoris MG1363'. Microbiology, * (146):935-947 [Details] | |
| (2000) | 'Identification of four loci isolated from two Streptococcus thermophilus phage genomes responsible for mediating bacteriophage resistance' Stanley E, Walsh L, van der Zwet A, Fitzgerald GF, van Sinderen D; (2000) 'Identification of four loci isolated from two Streptococcus thermophilus phage genomes responsible for mediating bacteriophage resistance'. Fems Microbiology Letters, 182 (2):271-277 [Details] | |
| (2000) | 'Molecular characterization of the lactococcal plasmid pCIS3: natural stacking of specificity subunits of a type I restriction/modification system in a single lactococcal strain' Seegers JF, van Sinderen D, Fitzgerald GF; (2000) 'Molecular characterization of the lactococcal plasmid pCIS3: natural stacking of specificity subunits of a type I restriction/modification system in a single lactococcal strain'. Microbiology, 146 ( Pt 2) :435-443 [Details] | |
| (2000) | 'Six putative two-component regulatory systems isolated from Lactococcus lactis subsp. cremoris MG1363' O’Connell-Motherway, Mary and van Sinderen, Douwe and Morel-Deville, Fran\ccoise and Fitzgerald, Gerald F and Ehrlich, S Dusko and Morel, Patrice (2000) 'Six putative two-component regulatory systems isolated from Lactococcus lactis subsp. cremoris MG1363'. BMC Microbiology, 146 (4):935-947 [Details] | |
| (2000) | 'Molecular characterization of the lactococcal plasmid pCIS3: natural stacking of specificity subunits of a type I restriction/modification system in a single lactococcal strain' Seegers, Jos FML and van Sinderen, Douwe and Fitzgerald, Gerald F (2000) 'Molecular characterization of the lactococcal plasmid pCIS3: natural stacking of specificity subunits of a type I restriction/modification system in a single lactococcal strain'. BMC Microbiology, 146 (2):435-443 [Details] | |
| (1999) | 'Structural and functional analysis of pCI65st, a 6 center dot 5 kb plasmid from Streptococcus thermophilus NDI-6' O'Sullivan, T,van Sinderen, D,Fitzgerald, G; (1999) 'Structural and functional analysis of pCI65st, a 6 center dot 5 kb plasmid from Streptococcus thermophilus NDI-6'. Microbiology-SGM, 145 :127-134 [Details] | |
| (1999) | 'Structural and functional analysis of pCI65st, a 6.5 kb plasmid from streptococcus thermophilus' O'Sullivan, T.F., van Sinderen, D., Fitzgerald, G.F.,; (1999) 'Structural and functional analysis of pCI65st, a 6.5 kb plasmid from streptococcus thermophilus'. Microbiology, 85 (*):127-134 [Details] | |
| (1999) | 'Identification and characterization of a lysis module present in a large proportion of bacteriophages infecting Streptococcus thermophilus' Sheehan MM, Stanley E, Fitzgerald GF, van Sinderen D; (1999) 'Identification and characterization of a lysis module present in a large proportion of bacteriophages infecting Streptococcus thermophilus'. Applied and Environmental Microbiology, 65 (2):569-577 [Details] | |
| (1999) | 'Structural and functional analysis of pCI65st, a 6\textperiodcentered 5 kb plasmid from Streptococcus thermophilus NDI-6' O'Sullivan, Tadhg and van Sinderen, Douwe and Fitzgerald, Gerald (1999) 'Structural and functional analysis of pCI65st, a 6\textperiodcentered 5 kb plasmid from Streptococcus thermophilus NDI-6'. Microbiology, 145 (1):127-134 [Details] | |
| (1999) | 'Characterisation of Streptococcus thermophilus CNRZ1205 and itscured and relysogenised derivative' Stanley, E., Fitzgerald., G.F. and van Sinderen, D.; (1999) 'Characterisation of Streptococcus thermophilus CNRZ1205 and itscured and relysogenised derivative'. Fems Microbiology Letters, * (176):503-510 [Details] | |
| (1999) | 'A comparative study of malthouse and brewhouse microflora' O'Sullivan, TF,Walsh, Y,O'Mahony, A,Fitzgerald, GF,van Sinderen, D (1999) 'A comparative study of malthouse and brewhouse microflora'. Journal of The Institute of Brewing, 105 :55-61 [Details] | |
| (1999) | 'Molecular characterization of a phage-encoded resistance system in Lactococcus lactis' McGrath, S., Seegers, J.F.M.L., Fitzgerald, G.F. and van Sinderen, D.; (1999) 'Molecular characterization of a phage-encoded resistance system in Lactococcus lactis'. Applied and Environmental Microbiology, * (65):1891-1899 [Details] | |
| (1997) | 'Two groups of bacteriophages infecting Streptococcus thermophilus can be distinguished on the basis of model of packaging and genetic determinants for major structural proteins' LeMarrec, C,vanSinderen, D,Walsh, L,Stanley, E,Vlegels, E,Moineau, S,Heinze, P,Fitzgerald, G,Fayard, B; (1997) 'Two groups of bacteriophages infecting Streptococcus thermophilus can be distinguished on the basis of model of packaging and genetic determinants for major structural proteins'. Applied and Environmental Microbiology, 63 :3246-3253 [Details] | |
| (1997) | 'Sequence analysis and characterization of phi O1205, a temperate bacteriophage infecting Streptococcus thermophilus CNRZ1205' Stanley, E,Fitzgerald, GF,LeMarrec, C,Fayard, B,vanSinderen, D; (1997) 'Sequence analysis and characterization of phi O1205, a temperate bacteriophage infecting Streptococcus thermophilus CNRZ1205'. Microbiology, 143 :3417-3429 [Details] | |
| (1997) | 'Cloning and sequence analysis of putative histidine protein kinases isolated from Lactococcus lactis MG1363' OConnellMotherway, M,Fitzgerald, GF,vanSinderen, D; (1997) 'Cloning and sequence analysis of putative histidine protein kinases isolated from Lactococcus lactis MG1363'. Applied and Environmental Microbiology, 63 :2454-2459 [Details] | |
| (1997) | '{Lactococcus Lactis} With Modified Preteolytic Properties in Milk Fermentation [B2300]' van Sinderen, Douwe; Fox, P.; Daly, C.; Fitzgerald, Gerald F.; (1997) '{Lactococcus Lactis} With Modified Preteolytic Properties in Milk Fermentation [B2300]'. The Irish Scientist of The Year, :42-* [Details] | |
| (1996) | 'Sequence Analysis and Molecular Characterization of the Temperate Lactococcal Bacteriophage R1t [B2328]' van Sinderen, Douwe; Karsens, Harma; Kok, Jan; Terpstra, Peter; Ruiters, Marcel H. J.; Venema, Gerard; Nauta, Arjen; (1996) 'Sequence Analysis and Molecular Characterization of the Temperate Lactococcal Bacteriophage R1t [B2328]'. Molecular Microbiology, 19.6 :1343-1355 [Details] | |
| (1996) | 'Regulated Expression of the {DinR} and {RecA} Genes During Competence Development and SOS Induction in {Bacillus Subtilis} [B5378]' Hayema, B. J.; van Sinderen, Douwe; Winterling, K.; Kooistra, J.; Venema, G.; Hamoen, L. W.; (1996) 'Regulated Expression of the {DinR} and {RecA} Genes During Competence Development and SOS Induction in {Bacillus Subtilis} [B5378]'. Molecular Microbiology, :75-86 [Details] | |
| (1996) | 'Inducible Gene Expression Mediated by a Repressor - Operator System Isolated From {Lactococcus Lactis} Bacteriophage R1t [B2329]' Nauta, Arjen; van Sinderen, Douwe; Karsens, Harma; Smit, Egbert; Venema, Gerard; Kok, Jan; (1996) 'Inducible Gene Expression Mediated by a Repressor - Operator System Isolated From {Lactococcus Lactis} Bacteriophage R1t [B2329]'. Molecular Microbiology, 19.6 :1331-1341 [Details] | |
| (1995) | 'Expression of the ATP-Dependent Deoxyribonuclease of {Bacillus Subtilis} Is Under Competence-Mediated Control [B5376]' Haijema, Bert Jan; Hamoen, Leendert Willem; Kooistra, Jan; Venema, Gerard; van Sinderen, Douwe; (1995) 'Expression of the ATP-Dependent Deoxyribonuclease of {Bacillus Subtilis} Is Under Competence-Mediated Control [B5376]'. Molecular Microbiology, :203-211 [Details] | |
| (1995) | 'Differential Expression of Two Closely Related Deoxyribonuclease Genes, {NucA} and {NucB}, in {Bacillus Subtilis} [B5377]' van Sinderen, Douwe; Kiewiet, Rense; Venema, Gerard; (1995) 'Differential Expression of Two Closely Related Deoxyribonuclease Genes, {NucA} and {NucB}, in {Bacillus Subtilis} [B5377]'. Molecular Microbiology, :213-223 [Details] | |
| (1995) | '{ComK} Encodes the Competence Transcription Factor (CTF), the Key Regulatory Protien for Competence Development in {Bacillus Subtilis} [B5375]' van Sinderen, Douwe; Luttinger, A.; Kong, L.; Dubnau, D.; Venema, G.; Hamoen, L. W.; (1995) '{ComK} Encodes the Competence Transcription Factor (CTF), the Key Regulatory Protien for Competence Development in {Bacillus Subtilis} [B5375]'. Molecular Microbiology, :455-462 [Details] | |
| (1995) | 'Molecular Genetics of Bacteriophage and Natural Phage Defence Systems in the Genus {Lactococcus} [B2323]' Garvey, P.; van Sinderen, Douwe; Twomey, D. P.; Hill, C.; Fitzgerald, Gerald F.; (1995) 'Molecular Genetics of Bacteriophage and Natural Phage Defence Systems in the Genus {Lactococcus} [B2323]'. International Dairy Journal, 5 :905-947 [Details] | |
| (1995) | 'A Small Gene, Designated {ComS}, Located Within the Coding Region of the Fourth Amino Acid-Activation Domain of {Srf}A, Is Required for Competence Development in {Bacillus Subtilis} [B5374]' Hamoen, L.; Eshuis, H.; Jongbloed, J.; Venema, G.; van Sinderen, Douwe; (1995) 'A Small Gene, Designated {ComS}, Located Within the Coding Region of the Fourth Amino Acid-Activation Domain of {Srf}A, Is Required for Competence Development in {Bacillus Subtilis} [B5374]'. Molecular Microbiology, :55-63 [Details] | |
| (1995) | 'Molecular genetics of bacteriophage and natural phage defence systems in the genus Lactococcus' Garvey, P. and Van Sinderen, D. and Twomey, DP and Hill, C. and Fitzgerald, GF (1995) 'Molecular genetics of bacteriophage and natural phage defence systems in the genus Lactococcus'. International Dairy Journal, 5 (8):905-947 [Details] | |
| (1994) | 'Identification of TlpC, a Novel 62 KDa MCP-Like Protein From {Bacillus Subtilis} [B5372]' Hanlon, D. W.; Rosario, M. M. L.; Ordal, G. W.; Venema, G.; van Sinderen, Douwe; (1994) 'Identification of TlpC, a Novel 62 KDa MCP-Like Protein From {Bacillus Subtilis} [B5372]'. Microbiology, :1847-1854 [Details] | |
| (1994) | 'Molecular Cloning and Sequence of {ComK}, a Gene Required for Genetic Competence in {Bacillus Subtilis} [B5371]' van Sinderen, Douwe; tenBerge, A.; Hayema, B. J.; Hamoen, L.; Venema, G.; (1994) 'Molecular Cloning and Sequence of {ComK}, a Gene Required for Genetic Competence in {Bacillus Subtilis} [B5371]'. Molecular Microbiology, :695-703 [Details] | |
| (1993) | 'Sequence and Analysis of the Genetic Locus Responsible for Surfactin Synthesis in {Bacillus Subtilis} [B5370]' Cosmina, P.; Rodriguez, F.; deFerra, F.; Grandi, G.; Venema, G.; van Sinderen, Douwe; (1993) 'Sequence and Analysis of the Genetic Locus Responsible for Surfactin Synthesis in {Bacillus Subtilis} [B5370]'. Molecular Microbiology, :821-831 [Details] | |
| (1993) | 'Characterisation of the {Srf}A Locus of {Bacillus Subtilis}: Only the Valine-Activating Domain of {Srf}A Is Involved in the Establishment of Genetic Competence [B5369]' van Sinderen, Douwe; Galli, G.; Cosmina, P.; deFerra, F.; Withoff, S.; Venema, G.; Grandi, G.; (1993) 'Characterisation of the {Srf}A Locus of {Bacillus Subtilis}: Only the Valine-Activating Domain of {Srf}A Is Involved in the Establishment of Genetic Competence [B5369]'. Molecular Microbiology, :833-841 [Details] | |
| (1990) | 'Development of a -galactosidase -complementation system for molecular cloning' Haima, P., Van Sinderen, D., Schotting, H., Bron, S. and G. Venema; (1990) 'Development of a -galactosidase -complementation system for molecular cloning'. Bacillus subtilis, 86 :63-69 [Details] | |
| (1990) | 'Isolation and characterization of comL, a transcription unit involved in competence development of Bacillus subtilis' Van Sinderen, D., Withoff, S., Boels, H. and G. Venema; (1990) 'Isolation and characterization of comL, a transcription unit involved in competence development of Bacillus subtilis'. Mol. Gen. Genet, 224 :396-404 [Details] | |
| (1990) | 'An improved beta-galactosidase alpha-complementation system for molecular cloning' Haima, P., Van Sinderen, D., Bron, S. and G. Venema; (1990) 'An improved beta-galactosidase alpha-complementation system for molecular cloning'. Bacillus subtilis, 93 :41-47 [Details] | |
| (1987) | 'Cell wall-associated proteases of Streptococcus cremoris' Hugenholtz, J., Van Sinderen, D., Kok, J. and W. Konings; (1987) 'Cell wall-associated proteases of Streptococcus cremoris'. Appl. Environ. Microbiol, 53 :853-859 [Details] |
Book Chapters
| Year | Publication | |
|---|---|---|
| (2014) | 'The Human Microbiota and Microbiome' Marco Ventura, Turroni, F Strati, D van Sinderen (2014) 'The Human Microbiota and Microbiome' In: The Human Microbiota and Microbiome. UK: CABI. [Details] | |
| (2008) | 'Analysis and practical application of LAB genomes' Mayo, B., Van Sinderen, D., Ventura, M., Alvarez-Martin, P. and M. O¿Connell-Motherway; (2008) 'Analysis and practical application of LAB genomes' In: Molecular aspects of lactic acidbacteria for traditional and new applications. Kerala, India: Research Signpost. [Details] | |
| (2007) | 'Bacteriophage-host interaction in lactic acid bacteria' Vegge, C.S., Kenny, J.G., Brondsted, L., McGrath, S. and Van Sinderen, D; (2007) 'Bacteriophage-host interaction in lactic acid bacteria' In: Genetics and Molecular Biology. Caister Academic Press: Norfolk, UK. [Details] | |
| (2007) | 'Bacteriophage bioinformatics and genomics' Canchaya, C., Ventura, M. and Van Sinderen, D; (2007) 'Bacteriophage bioinformatics and genomics' In: Genetics and Molecular Biology. Norfolk, UK: Caister Academic Press. [Details] | |
| (2006) | 'Trends in Biotechnology Researc' Kenny, J.G., O¿Driscoll, J., Mahony, J., Van Sinderen, D., and Mc Grath, S. ; (2006) 'Trends in Biotechnology Researc' In: Bacteriophages in Biotechnology. New York: Nova Scientific publishers. [Details] | |
| (2004) | 'Starter cultures: bacteriophage' McGrath, S and Fitzgerald, GF and van Sinderen, D (2004) 'Starter cultures: bacteriophage' In: Cheese: Chemistry, Physics and Microbiology. UK: Elsevier. [Details] | |
| (2003) | 'Comparative genomics of bacteriophage infecting lactic acid bacteria' Stanley, Elizabeth and Mc Grath, Stephen and Fitzgerald, Gerald F and van Sinderen, Douwe (2003) 'Comparative genomics of bacteriophage infecting lactic acid bacteria' In: Springer US. [Details] | |
| (2003) | 'Comparative genomics of bacteriophage infecting Lactic acid bacteria' Stanley, E., McGrath, S., Fitzgerald, GF., van Sinderen, D.; (2003) 'Comparative genomics of bacteriophage infecting Lactic acid bacteria' In: *. [Details] | |
| (2003) | 'Comparative genomics of bacteriophage infecting lactic acid bacteria' Stanley, E., McGrath, S., Fitzgerald, GF., Van Sinderen, D; (2003) 'Comparative genomics of bacteriophage infecting lactic acid bacteria' In: The Lactic Acid Bacteria, Volume III, The Genetics of the LAB. Aspen, Maryland, USA: *. [Details] | |
| (2003) | 'Comparative genomics of bacteriophage infecting Lactic Acid Bacteria' Stanley, E., McGrath, S., Fitzgerald, G.F. and van Sinderen.; (2003) 'Comparative genomics of bacteriophage infecting Lactic Acid Bacteria' In: The Lactic Acid Bacteria, Volume III, The Genetics of the LAB. Aspen, Maryland, USA: Aspen, Maryland, USA. [Details] | |
| (2003) | 'Bacteriophage of lactic acid bacteria: In cheese' McGrath, M., Fitzgerald, GF., van Sinderen, D.; (2003) 'Bacteriophage of lactic acid bacteria: In cheese' In: Irish Journal of Agricultural and Food Research. Ireland: Teagasc. [Details] |
Edited Books
| Year | Publication | |
|---|---|---|
| Stephen McGrath and Douwe van Sinderen (Ed.). Bacteriophage; Genetics and Molecular Biology. Norfolk, Uk: Caister Academic Press. [Details] |
Other Journals
| Year | Publication | |
|---|---|---|
| (2007) | 'The genus Lactobacillus - a genomic basis for understanding its diversity' Claesson, Marcus J. and van Sinderen, Douwe and O'Toole, Paul W. (2007) 'The genus Lactobacillus - a genomic basis for understanding its diversity' Fems Microbiology Letters, 269 (1) :22-28. [DOI] [Details] | |
| (2006) | 'Comparative and functional analysis of sortase-dependent proteins in the predicted secretome of Lactobacillus salivarius UCC118' van Pijkeren, JP and Canchaya, C and Ryan, KA and Li, Y and Claesson, MJ and Sheil, B and Steidler, L and O'Mahony, L and Fitzgerald, GF and van Sinderen, D and O'Toole, PW (2006) 'Comparative and functional analysis of sortase-dependent proteins in the predicted secretome of Lactobacillus salivarius UCC118' Applied and Environmental Microbiology, 72 (6) :4143-4153. [DOI] [Details] | |
| (2006) | 'Polyphasic analysis indicates that Lactobacillus salivarius subsp salivarius and Lactobacillus salivarius subsp salicinius do not merit separate subspecies status' Li, Yin and Raftis, Emma and Canchaya, Carlos and Fitzgerald, Gerald F. and van Sinderen, Douwe and O'Toole, Paul W. (2006) 'Polyphasic analysis indicates that Lactobacillus salivarius subsp salivarius and Lactobacillus salivarius subsp salicinius do not merit separate subspecies status' International Journal of Systematic and Evolutionary Microbiology, 56 :2397-2403. [DOI] [Details] | |
| (2006) | 'Comparative genomics and transcriptional analysis of prophages identified in the Genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei' Ventura, M and Canchaya, C and Bernini, V and Altermann, E and Barrangou, R and McGrath, S and Claesson, MJ and Li, Y and Leahy, S and Walker, CD and Zink, R and Neviani, E and Steele, J and Broadbent, J and Klaenhammer, TR and Fitzgerald, GF and O'Toole, PW and van Sinderen, D (2006) 'Comparative genomics and transcriptional analysis of prophages identified in the Genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei' Applied and Environmental Microbiology, 72 (5) :3130-3146. [DOI] [Details] | |
| (2006) | 'Diversity of the genus Lactobacillus revealed by comparative genomics of five species' Canchaya, Carlos and Claesson, Marcus J. and Fitzgerald, Gerald F. and van Sinderen, Douwe and O'Toole, Paul W. (2006) 'Diversity of the genus Lactobacillus revealed by comparative genomics of five species' Microbiology-Sgm, 152 :3185-3196. [DOI] [Details] | |
| (2006) | 'Multireplicon genome architecture of Lactobacillus salivarius' Claesson, MJ and Li, Y and Leahy, S and Canchaya, C and van Pijkeren, JP and Cerdeno-Tarraga, AM and Parkhill, J and Flynn, S and O'Sullivan, GC and Collins, JK and Higgins, D and Shanahan, F and Fitzgerald, GF and van Sinderen, D and O'Toole, PW (2006) 'Multireplicon genome architecture of Lactobacillus salivarius' Proceedings of the National Academy of Sciences of the United States of America, 103 (17) :6718-6723. [DOI] [Details] | |
| (1999) | 'Molecular characterization of a phage-encoded resistance system in Lactococcus lactis' McGrath, Stephen and Seegers, Jos FML and Fitzgerald, Gerald F and van Sinderen, Douwe (1999) 'Molecular characterization of a phage-encoded resistance system in Lactococcus lactis' Applied and environmental microbiology, 65 (5) :1891-1899. [Details] | |
| (1999) | 'Identification and characterization of a lysis module present in a large proportion of bacteriophages infectingStreptococcus thermophilus' Sheehan, Michelle M and Stanley, Elizabeth and Fitzgerald, Gerald F and van Sinderen, Douwe (1999) 'Identification and characterization of a lysis module present in a large proportion of bacteriophages infectingStreptococcus thermophilus' Applied and environmental microbiology, 65 (2) :569-577. [Details] | |
| (1997) | 'Cloning and sequence analysis of putative histidine protein kinases isolated from Lactococcus lactis MG1363' O'Connell-Motherway, Mary and Fitzgerald, Gerald F and van Sinderen, DOUWE (1997) 'Cloning and sequence analysis of putative histidine protein kinases isolated from Lactococcus lactis MG1363' Applied and environmental microbiology, 63 (6) :2454-2459. [Details] | |
| (1997) | 'Sequence analysis and characterization of \oO1205, a temperate bacteriophage infecting Streptococcus thermophilus CNRZ1205' Stanley, Elizabeth and Fitzgerald, Gerald F and Le Marrec, Claire and Fayard, Blandine and van Sinderen, Douwe (1997) 'Sequence analysis and characterization of \oO1205, a temperate bacteriophage infecting Streptococcus thermophilus CNRZ1205' Microbiology, 143 (11) :3417-3429. [Details] | |
| (1997) | 'Two groups of bacteriophages infecting Streptococcus thermophilus can be distinguished on the basis of mode of packaging and genetic determinants for major structural proteins' Le Marrec, Claire and van Sinderen, DOUWE and Walsh, Linda and Stanley, Elizabeth and Vlegels, Ellie and Moineau, Sylvain and Heinze, Petra and Fitzgerald, Gerald and Fayard, Blandine (1997) 'Two groups of bacteriophages infecting Streptococcus thermophilus can be distinguished on the basis of mode of packaging and genetic determinants for major structural proteins' Applied and environmental microbiology, 63 (8) :3246-3253. [Details] | |
| (1995) | 'Molecular genetics of bacteriophage and natural phage defence systems in the genus< i> Lactococcus' Garvey, P and Van Sinderen, D and Twomey, DP and Hill, C and Fitzgerald, GF (1995) 'Molecular genetics of bacteriophage and natural phage defence systems in the genus< i> Lactococcus' International Dairy Journal, 5 (8) :905-947. [Details] |
Conference Publications
| Year | Publication | |
|---|---|---|
| (2010) | Microbes and Health Sackler Colloquium Claesson, MJ; Cusack, S; O'Sullivan, O; Greene-Diniz, R; de Weerd, H; Flannery, E; Marchesi, JR; Falush, D; Dinan, T; Fitzgerald, G; Stanton, C; van Sinderen, D; O'Connor, M; Harnedy, N; O'Connor, K; Henry, C; O'Mahony, D; Fitzgerald, AP; Shanahan, F; Twomey, C;Hill, C; Ross, RP; O'Toole, PW; (2010) Composition, variability, and temporal stability of the intestinal microbiota of the elderly Microbes and Health Sackler Colloquium [DOI] [Details] | |
| (2007) | Proceedings of the 31st EBC Conference Arendt EK, Ulmer H, Ström K, Sjögren J, van Sinderen D and Dal Bello F.; (2007) Isolation and characterisation of antifungal compounds from lactic acid bacteria and their application in malting Proceedings of the 31st EBC Conference [Details] |
Book Reviews
| Year | Publication | |
|---|---|---|
| (2012) | Phages of lactic acid bacteria: The role of genetics in understanding phage-host interactions and their co-evolutionary processes. Mahony, J,Ainsworth, S,Stockdale, S,van Sinderen, D (2012) Phages of lactic acid bacteria: The role of genetics in understanding phage-host interactions and their co-evolutionary processes. Book Reviews [DOI] [Details] | |
| (2012) | Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria. Ventura, M,Turroni, F,Motherway, MO,MacSharry, J,van Sinderen, D (2012) Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria. Book Reviews [DOI] [Details] | |
| (2012) | Structural Aspects of the Interaction of Dairy Phages with Their Host Bacteria. Mahony, J,van Sinderen, D (2012) Structural Aspects of the Interaction of Dairy Phages with Their Host Bacteria. Book Reviews [DOI] [Details] | |
| (2011) | Bacteriophages as biocontrol agents of food pathogens. Mahony, J,McAuliffe, O,Ross, RP,van Sinderen, D (2011) Bacteriophages as biocontrol agents of food pathogens. Book Reviews [DOI] [Details] | |
| (2011) | Carbohydrate metabolism in Bifidobacteria. Pokusaeva, K,Fitzgerald, GF,van Sinderen, D (2011) Carbohydrate metabolism in Bifidobacteria. Book Reviews [DOI] [Details] | |
| (2009) | Bacterial vitamin B2, B11 and B12 overproduction: An overview. Burgess, CM,Smid, EJ,van Sinderen, D (2009) Bacterial vitamin B2, B11 and B12 overproduction: An overview. Book Reviews [DOI] [Details] | |
| (2008) | Genome analysis of food grade lactic acid-producing bacteria: From basics to applications. Mayo, B,van Sinderen, D,Ventura, M (2008) Genome analysis of food grade lactic acid-producing bacteria: From basics to applications. Book Reviews [Details] | |
| (2007) | Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363. Wegmann, U,O'Connell-Motherwy, M,Zomer, A,Buist, G,Shearman, C,Canchaya, C,Ventura, M,Goesmann, A,Gasson, MJ,Kuipers, OP,van Sinderen, D,Kok, J (2007) Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363. Book Reviews [DOI] [Details] | |
| (2005) | Fermented functional foods based on probiotics and their biogenic metabolites. Stanton, C,Ross, RP,Fitzgerald, GF,Van Sinderen, D (2005) Fermented functional foods based on probiotics and their biogenic metabolites. Book Reviews [DOI] [Details] | |
| (2005) | Enhancing the microbiological stability of malt and beer - A review. Vaughan, A,O'Sullivan, T,van Sinderen, D (2005) Enhancing the microbiological stability of malt and beer - A review. Book Reviews [Details] | |
| (2004) | The impact of bacteriophage genomics. McGrath, S,Fitzgerald, GF,van Sinderen, D (2004) The impact of bacteriophage genomics. Book Reviews [DOI] [Details] | |
| (2002) | Bacteriophage-derived genetic tools for use in lactic acid bacteria. McGrath, S,van Sinderen, D,Fitzgerald, GF (2002) Bacteriophage-derived genetic tools for use in lactic acid bacteria. Book Reviews [DOI] [Details] |
Other
| Year | Publication | |
|---|---|---|
| (2008) | Human gut microbiota and bifidobacteria: from composition to functionality. Turroni, F,Ribbera, A,Foroni, E,van Sinderen, D,Ventura, M (2008) Human gut microbiota and bifidobacteria: from composition to functionality. Other [DOI] [Details] | |
| (2008) | Human Gut Microbiota and Bifidobacteria: From Composition to Functionality. Turroni, F, Ribbera, A, Foroni, E, van Sinderen, D, Ventura, M; (2008) Human Gut Microbiota and Bifidobacteria: From Composition to Functionality. Other [DOI] [Details] | |
| (2007) | Exploiting Bifidobacterium Genomes: The Molecular Basis of Stress Response. Lindner, JDD, Canchaya, C, Zhang, Z, Neviani, E, Fitzgerald, GF, van Sinderen, D, Ventura, M; (2007) Exploiting Bifidobacterium Genomes: The Molecular Basis of Stress Response. Other [DOI] [Details] | |
| (2007) | Genomics As A Means to Understand Bacterial Phylogeny and Ecological Adaptation: The Case of Bifidobacteria (Vol 91, Pg 351, 2007). Ventura, M, Canchaya, C, Fitzgerald, GF, Gupta, RS, van Sinderen, D; (2007) Genomics As A Means to Understand Bacterial Phylogeny and Ecological Adaptation: The Case of Bifidobacteria (Vol 91, Pg 351, 2007). Other [DOI] [Details] | |
| (2007) | From Bacterial Genome to Functionality; Case Bifidobacteria. Ventura, M, O'Connell-Motherway, M, Leahy, S, Moreno-Munoz, JA, Fitzgerald, GF, van Sinderen, D; (2007) From Bacterial Genome to Functionality; Case Bifidobacteria. Other [DOI] [Details] | |
| (2007) | From bacterial genome to functionality; case bifidobacteria. Ventura, M,O'Connell-Motherway, M,Leahy, S,Moreno-Munoz, JA,Fitzgerald, GF,van Sinderen, D (2007) From bacterial genome to functionality; case bifidobacteria. Other [DOI] [Details] | |
| (2007) | Exploiting Bifidobacterium genomes: The molecular basis of stress response. Lindner, JDD,Canchaya, C,Zhang, Z,Neviani, E,Fitzgerald, GF,van Sinderen, D,Ventura, M (2007) Exploiting Bifidobacterium genomes: The molecular basis of stress response. Other [DOI] [Details] | |
| (2005) | Getting better with bifidobacteria. Leahy, SC,Higgins, DG,Fitzgerald, GF,van Sinderen, D (2005) Getting better with bifidobacteria. Other [DOI] [Details] | |
| (2002) | Metabolic engineering of lactic acid bacteria for the production of nutraceuticals. Hugenholtz, J,Sybesma, W,Groot, MN,Wisselink, W,Ladero, V,Burgess, K,van Sinderen, D,Piard, JC,Eggink, G,Smid, EJ,Savoy, G,Sesma, F,Jansen, T,Hols, P,Kleerebezem, M (2002) Metabolic engineering of lactic acid bacteria for the production of nutraceuticals. Other [Details] | |
| (2002) | Discovering lactic acid bacteria by genomics. Klaenhammer, T,Altermann, E,Arigoni, F,Bolotin, A,Breidt, F,Broadbent, J,Cano, R,Chaillou, S,Deutscher, J,Gasson, M,van de Guchte, M,Guzzo, J,Hartke, A,Hawkins, T,Hols, P,Hutkins, R,Kleerebezem, M,Kok, J,Kuipers, O,Lubbers, M,Maguin, E,McKay, L,Mills, D,Nauta, A,Overbeek, R,Pel, H,Pridmore, D,Saier, M,van Sinderen, D,Sorokin, A,Steele, J,O'Sullivan, D,de Vos, W,Weimer, B,Zagorec, M,Siezen, R (2002) Discovering lactic acid bacteria by genomics. Other [Details] | |
| (2000) | Characterisation of antimicrobial producing lactic acid bacteria from malted barley. O'Mahony, A,O'Sullivan, T,Walsh, Y,Vaughan, A,Maher, M,Fitzgerald, GF,van Sinderen, D (2000) Characterisation of antimicrobial producing lactic acid bacteria from malted barley. Other [Details] | |
| (1999) | From DNA sequence to application: possibilities and complications. Venema, G,Kok, J,van Sinderen, D (1999) From DNA sequence to application: possibilities and complications. Other [Details] | |
| (1995) | Molecular genetics of bacteriophage and natural phage defence systems in the genus Lactococcus. Garvey, P,vanSinderen, D,Twomey, DP,Hill, C,Fitzgerald, GF (1995) Molecular genetics of bacteriophage and natural phage defence systems in the genus Lactococcus. Other [Details] |
Published Letters
| Year | Publication | |
|---|---|---|
| (2012) | An efficient and reproducible method for transformation of genetically recalcitrant bifidobacteria. Serafini, F,Turroni, F,Guglielmetti, S,Gioiosa, L,Foroni, E,Sanghez, V,Bartolomucci, A,Motherway, MO,Palanza, P,van Sinderen, D,Ventura, M (2012) An efficient and reproducible method for transformation of genetically recalcitrant bifidobacteria. Published Letters [DOI] [Details] |
Reviews
| Year | Publication | |
|---|---|---|
| (2013) | Bacteria as vitamin suppliers to their host: a gut microbiota perspective. LeBlanc, JG,Milani, C,de Giori, GS,Sesma, F,van Sinderen, D,Ventura, M (2013) Bacteria as vitamin suppliers to their host: a gut microbiota perspective. Reviews [DOI] [Details] | |
| (2013) | Bacteriophage Orphan DNA Methyltransferases: Insights from Their Bacterial Origin, Function, and Occurrence. Murphy, J,Mahony, J,Ainsworth, S,Nauta, A,van Sinderen, D (2013) Bacteriophage Orphan DNA Methyltransferases: Insights from Their Bacterial Origin, Function, and Occurrence. Reviews [DOI] [Details] | |
| (2013) | Current perspectives on antifungal lactic acid bacteria as natural bio-preservatives. Crowley, S,Mahony, J,van Sinderen, D (2013) Current perspectives on antifungal lactic acid bacteria as natural bio-preservatives. Reviews [DOI] [Details] | |
| (2012) | Lactococcal 936-type phages and dairy fermentation problems: from detection to evolution and prevention. Mahony, J,Murphy, J,van Sinderen, D (2012) Lactococcal 936-type phages and dairy fermentation problems: from detection to evolution and prevention. Reviews [DOI] [Details] | |
| (2011) | B-Group vitamin production by lactic acid bacteria - current knowledge and potential applications. LeBlanc, JG,Laino, JE,del Valle, MJ,Vannini, V,van Sinderen, D,Taranto, MP,de Valdez, GF,de Giori, GS,Sesma, F (2011) B-Group vitamin production by lactic acid bacteria - current knowledge and potential applications. Reviews [DOI] [Details] | |
| (2008) | Bioprotective potential of lactic acid bacteria in malting and brewing. Rouse, S,van Sinderen, D (2008) Bioprotective potential of lactic acid bacteria in malting and brewing. Reviews [Details] | |
| (2004) | Insights into the taxonomy, genetics and physiology of bifidobacteria. Ventura, M,van Sinderen, D,Fitzgerald, GF,Zink, R (2004) Insights into the taxonomy, genetics and physiology of bifidobacteria. Reviews [Details] |
Professional Activities
Honours and Awards
| Year | Title | Awarding Body | |
|---|---|---|---|
| 1994 | SNS Bank prize for the best PhD thesis produced in the exact sciences at the University of Groningen | SNS Bank-sponsored to the University of Groningen, The Netherlands |
Professional Associations
| Association | Function | From / To | |
|---|---|---|---|
| Society for Applied Microbiology | Member | 15-MAR-06 / | |
| American Society of Microbiology | Member | 05-NOV-02 / |
Patents
| Patent Number | Title | Inventor | Granted | |
|---|---|---|---|---|
| WO2011007007-A1 | Bacterial species for oral administration for delivery of agent and tumor detection | OSULLIVAN G, TANGNEY M, VAN SINDEREN D, et al. | 16-JUL-10 | |
| WO2014140229-A1 | Kit for determining phage susceptibility | Van Sinderen et al | 13-MAR-14 | |
| EP2592158-A1 | Lactobacillus plantarum for extending the shelf-life of a food product or used as an anti-fungal agent | Van Sinderen and Crowley | 14-NOV-12 | |
| WO2010055499-A2 | Bifidobacterium longum strain useful as probiotic | BASCOM C, CHARBONNEAU D L, GRANT R A, OMAHONY L, SONG Y, VAN SINDEREN D, et al | 20-MAY-10 |
Committees
| Committee | Function | From / To | |
|---|---|---|---|
| Member of the Novel Foods GMO subcommittee, Food Safety Authority Ireland (FSAI) | Member | 1998 / 2007 | |
| Member of the Health and Life Science panel of the Technology Foresight Committee, Irish Council for Science, Technology and Innovation. | 2000 / | ||
| International Committee on the Taxonomy of Viruses | Member | 2001 / |
Employment
| Employer | Position | From / To | |
|---|---|---|---|
| University College Cork | College Lecturer | 01-MAY-98 / 01-JAN-04 | |
| RijksUniversity Groningen, The Netherlands | Postdoctoral Scientist | 01-AUG-93 / 30-APR-94 | |
| National Food Biotechnology Centre, University College Cork | Senior Research Scientist | 01-MAY-94 / 31-JAN-96 | |
| Department of Microbiology, University College Cork | EMBO Long Term Fellow | 01-FEB-96 / 31-JAN-98 | |
| University College Cork | Senior Lecturer | 01-JAN-04 / 31-DEC-07 | |
| University College Cork | Associate Professor | 01-JAN-08 / |
Education
| Year | Institution | Qualification | Subject | |
|---|---|---|---|---|
| 1988 | RijksUniversity Groningen, The Netherlands | BSc | Biochemistry | |
| 1990 | RijksUniversiteit Groningen (RUG), The Netherlands | MSc | Molecular Biology | |
| 1994 | RijksUniversiteit Groningen (RUG), The Netherlands | PhD | Molecular Genetics |
Languages
| Language | Reading | Writing | Speaking | |
|---|---|---|---|---|
| Dutch | Fluent | Fluent | Fluent |
Journal Activities
| Journal | Role | To / From | |
|---|---|---|---|
| Microbial Biotechnology | Member of Editorial Board | 01-JAN-07 - | |
| Microbiology Sgm | Member of Editorial Board | 01-JAN-98 - 31-DEC-05 | |
| Peerj | Member of Editorial Board | 01-JUL-13 - 31-DEC-14 |
Other Activities
| Description | |
|---|---|
Regularly act as reviewer for grant applications from a variety of research funding agencies such as the Wellcome Trust, Biotechnology and Biological Sciences Research Council (BBSCRC UK), Enterprise Ireland (various schemes), the Dutch Organisation for Scientific Research, the Swiss National Research Council, Norwegian Research Council, European Union Frame Work Programmes, French National Research Council (ANR) and the Italian Foundation for Scientific Research. Regularly act (in addition to my role of member of the editorial board of Microbial Biotechnology) as ad hoc reviewer for submitted manuscripts to a wide variety of journals (from Applied Environmental Microbiology, Microbiology SGM, Journal of Bacteriolgy, Molecular Microbiology, PLoS One to PNAS USA and Nature). On average I review 30 manuscripts per annum. I have served on Scientific Committees for various International conferences and have also served many times as Chair of scientific sessions. Former member on the Editorial Committee for Molecular biology of the scientific publishing company Foxwell & Davies. I am currently an invited member of the Board of Experts of the Italian Ministry of Education, University and Scientific Research. I have acted as External Examiner to more than 25 PhD committees in the The Netherlands, Belgium, Norway, Sweden, France, Spain, Italy, and Denmark (currently between 3-5 per annum), and also regularly (approx. 3-5 per annum) act as an internal examiner to PhD viva in UCC. I have given over 75 research seminars at international conferences and symposia in various capacities (invited speaker, key note, plenary speaker). Some recent examples are:
|
Teaching Activities
Teaching Interests
Recent Postgraduates
| Graduation Year | Student Name | Institution | Degree Type | Thesis Title | |
|---|---|---|---|---|---|
| 2015 | James Murphy | University College Cork | PhD | The Biodiversity, control and genetic characterisation of the lactococcal 936 group phages | |
| 2014 | Stephen Robert Stockdale | University College Cork | PhD | Mutagenic and Molecular Analyses of Lactococcal Bacteriophages TP901-1 and Tuc2009 | |
| 2014 | Charlotte LeClaire | University College Cork | MSc | Isolation and characterisation of bacteriophages from a Finnish dairy plant | |
| 2014 | KerryJoan O'Connell | University College Cork | PhD | Carbohydrate metabolism in Bifidobacteria | |
| 2013 | Sarah Crowley | University College Cork | PhD | Food preservation using lactic acid bacteria | |
| 2013 | Francesca Bottacini | University College Cork | PhD | Comparative genomics of bifidobacteria | |
| 2013 | Claire Foley | University College Cork | MSc | The potential of a synbiotic treatment as prophylaxis for Clostridium difficile-associated diarrhoea | |
| 2013 | Stuart Ainsworth | University College Cork | PhD | Characterisation of bacteriophage-host interactions in Lactococcus lactis | |
| 2012 | James Murphy | University College Cork | MSc | Prevalence and molecular analysis of bacteriophages from a undefined mixed starter culture | |
| 2011 | Karina Pokusaeva | University College Cork | PhD | Molecular analysis of carbohydrate metabolism in Bifidobacterium breve UCC2003 | |
| 2011 | Saranna Fanning | University College Cork | PhD | Cell surface regulation in Bifidobacterium breve and Candida albicans | |
| 2011 | Bridget Royer | University College Cork | MSc | The prevalence and biodiversity of lactococcal bacteriophages in a Dutch dairy environment | |
| 2011 | Michelle Cronin | University College Cork | PhD | Genetic manipulation of Bifidobacterium breve UCC2003 | |
| 2011 | Colm Kiely | University College Cork | MSc | A model of bacteriophage-host interactions, and its relevance to the food industry | |
| 2009 | Therese Deasy | University College Cork | MSc | An ecological study of bacteriophages infecting lactic acid bacteria | |
| 2009 | Elaine Crowley | University College Cork | MSc | Amino acid biosynthesis in Lactobacillus helveticus DPC4571 and characterisation of two aminotransferase enzymes | |
| 2008 | Jennifer Mahony | University College Cork | PhD | Lactococcal superinfection exclusion systems and their targeted phages: a genetic and biological analysis | |
| 2007 | Susan Rouse | University College Cork | PhD | Investigation of the bio-preservative properties of lactic acid bacteria from the malting environment, with potential application in the food and brewing industry | |
| 2007 | Devika Mathur | University College Cork | MSc | Molecular analysis of the lactococcal bacteriophage Tuc2009 | |
| 2007 | Jan-Peter van Pijkeren | University College Cork | PhD | Functional characterisation of surface components in Lactobacillus salivarius UCC118 | |
| 2006 | Marcus Claesson | University College Cork | PhD | Genome analysis of a commensal Lactobacillus | |
| 2006 | Jonathan O'Driscoll | University College Cork | PhD | Molecular characterisation of the LlaJI restriction-modification system encoded by lactococcal plasmid pNP40 | |
| 2005 | Sinead Ryan | University College Cork | PhD | Genetic and biochemical characterisation of beta-fructofuranosidase and amylopullulanase activities in Bifidobacterium breve UCC2003 | |
| 2005 | Catherine Maeve Burgess | University College Cork | PhD | Molecular characterisation of riboflavin metabolism in Lactococcus lactis | |
| 2004 | Anne Vaughan | University College Cork | PhD | The study of bacteriocin-producing lactic acid bacteria from the brewing environment | |
| 2004 | Luca Settani | University College Cork | PhD | Typing, culture-independenrt detection and bacteriocinogenic activity of sourdough lactic acid bacteria | |
| 2003 | Peter Curley | University College Cork | PhD | Novel proteolytic activities and regulation of proteolysis in Lactococcus lactis | |
| 2003 | Laura MacConaill | University College Cork | PhD | Signal transduction and protein export in Bifidobacterium species | |
| 2002 | Fiona Crispie | University College Cork | PhD | Identification and characterisation of regulatory systems from Streptococcus thermophilus CNRZ1205-3 | |
| 2002 | Denis Hartnett | University College Cork | MSc | Evaluation and application of lactic acid bacteria to improve the malting and brewing process | |
| 2002 | Cian O'Mahony | University College Cork | MSc | Development of genetic technologies for the manipulation of bifidobacterium species | |
| 2001 | Stephen McGrath | University College Cork | PhD | Development of engineered phage-resistance systems for use in Lactococcus lactis | |
| 2001 | Stephen Leach | University College Cork | PhD | Molecular analysis of the genome of the temperate lactococcal bacteriophage Tuc2009 | |
| 2001 | Mary O'Connell Motherway | University College Cork | PhD | Identification and characterisation of two-component signal transduction systems from Lactococcus lactis MG1363 | |
| 2001 | Francis Glynn | University College Cork | MSc | Characterisation at tthe DNA sequence level of the Lactococcus lactis plasmid pNP40 | |
| 2000 | Saskia Verschueren | University College Cork | MSc | Isolation and characterisation of bacillus cerues and closely related Bacillus species from Irish dairy products | |
| 1999 | Michelle Sheehan | University College Cork | PhD | Characterisation of lytic systems encoded by bacteriohages of Lactococcus and Streptococcus | |
| 1999 | Elizabeth Stanley | University College Cork | PhD | genetic and physical characterisation of a lysogenic and lytic bacteriophage infecting Streptococcus thermophilus |
Current Postgraduate Students
| Student | Degree Type | |
|---|---|---|
| Casey Eoghan Diarmuid | Doctoral Degree | |
| Ambrogi Valentina | Doctoral Degree | |
| Kelleher Philip Richard | Doctoral Degree | |
| Oliveira Joana | Doctoral Degree | |
| Egan Muireann Michelle | Doctoral Degree | |
| Hayes Stephen George | Doctoral Degree | |
| Erazo Garzon Andrea Carolina | Doctoral Degree | |
| Kelly Emer | Doctoral Degree | |
| Lanigan Noreen Theresa | Doctoral Degree | |
| James Kieran Michael | Doctoral Degree | |
| Mc Donnell Brian | Doctoral Degree | |
| O Callaghan Amy | Doctoral Degree | |
| Hickey Ana Claire | Doctoral Degree | |
| Alqarni Mona | Doctoral Degree | |
| Theodorou Ilias | Doctoral Degree |
Modules Taught
| Term (ID)) | Title | Link | Subject | |
|---|---|---|---|---|
| 2015 | Research Frontiers in Microbiology | MB4027 | Research Frontiers in Microbiology | |
| 2015 | Introduction to Biological Chemistry and Microbiology | BL1003 | Introduction to Biological Chemistry and Microbiology | |
| 2015 | Molecular Biology and Physiology of Bacteria | MB4026 | Molecular Biology and Physiology of Bacteria | |
| 2015 | Research Project | GN4002 | Research Project | |
| 2015 | Food Biotechnology | MB4113 | Food Biotechnology | |
| 2015 | Functional Foods for Health | MB6103 | Functional Foods for Health | |
| 2015 | Research Dissertation | MB6303 | Research Dissertation | |
| 2015 | Functional Foods for Health | MB6003 | Functional Foods for Health | |
| 2015 | Literature Project on Genetics | GN3002 | Literature Project on Genetics | |
| 2015 | Research Project | MB4002 | Research Project | |
| 2015 | Introduction to Food and Industrial Microbiology | MB1901 | Introduction to Food and Industrial Microbiology | |
| 2015 | Research Frontiers in Food Microbiology | MB6027 | Research Frontiers in Food Microbiology | |
| 2015 | Introductory Molecular Biology | ML2001 | Introductory Molecular Biology | |
| 2015 | Food Biotechnology | MB4013 | Food Biotechnology |
Contact details
- Douwe Van Sinderen
Associate Professor - d.vansinderen@ucc.ie
- Microbiology
BioSciences Institute
University College Cork,
Cork, Ireland - +353 21 490 1365
- +353 21 490 3101
- Professor (Scale 2)
- d.vansinderen@ucc.ie
- Microbiology
University College Cork
Cork
Ireland - +353-21-490-3000
- +353 21 490 3000
- www.ucc.ie/